Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4291
Experiment: BHIS with Chenodeoxycholic 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | BHIS with Chenodeoxycholic 0.25 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 5,652,668 | + | -1.1 | |||
| 5,652,684 | + | -0.2 | |||
| 5,652,711 | - | +0.6 | |||
| 5,652,713 | - | +0.2 | |||
| 5,652,761 | - | -3.2 | |||
| 5,652,772 | + | -0.9 | |||
| 5,652,809 | + | -0.1 | |||
| 5,652,810 | - | -1.1 | |||
| 5,652,815 | + | +0.1 | |||
| 5,652,816 | - | -1.3 | |||
| 5,652,886 | - | +0.3 | |||
| 5,653,008 | + | +0.5 | |||
| 5,653,023 | - | -1.5 | |||
| 5,653,024 | + | -0.1 | |||
| 5,653,024 | + | +0.3 | |||
| 5,653,029 | - | -2.1 | |||
| 5,653,083 | - | BT4292 | 0.12 | -1.0 | |
| 5,653,083 | - | BT4292 | 0.12 | -0.1 | |
| 5,653,215 | + | BT4292 | 0.18 | -1.1 | |
| 5,653,403 | + | BT4292 | 0.27 | -0.8 |
Or see this region's nucleotide sequence