Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4290

Experiment: BHIS with Chenodeoxycholic 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Chenodeoxycholic 0.25 mg/ml
5,650,307	-		BT4289	0.82	-0.7
5,650,307	-		BT4289	0.82	-0.7
5,650,308	+		BT4289	0.82	-1.6
5,650,308	+		BT4289	0.82	-3.1
5,650,309	-		BT4289	0.82	-3.3
5,650,316	+		BT4289	0.82	-0.7
5,650,316	+		BT4289	0.82	-2.0
5,650,317	-		BT4289	0.83	+1.5
5,650,317	-		BT4289	0.83	-2.0
5,650,320	+		BT4289	0.83	-0.7
5,650,379	+		BT4289	0.88	+0.8
5,650,421	+				-1.5
5,650,421	+				-0.6
5,650,422	-				-1.2
5,650,442	-				-0.0
5,650,495	-				+0.0
5,650,520	+				+1.0
5,650,699	-				-1.5
5,650,699	-				-0.7
5,650,731	-				-2.3
5,650,762	+				-1.2
5,650,809	+				-0.3
5,650,829	-				-0.2
5,650,838	+				+0.8
5,650,841	-				-1.1
5,650,841	-				+0.1
5,650,841	-				-0.3
5,650,841	-				-0.7
5,650,909	-				-0.7
5,650,909	-				-0.2
5,650,909	-				-0.2
5,650,953	+				-3.7
5,650,955	+				-1.5
5,650,999	+				-2.4
5,651,035	-				-2.2
5,652,668	+				-1.1
5,652,684	+				-0.2
5,652,711	-				+0.6
5,652,713	-				+0.2
5,652,761	-				-3.2
5,652,772	+				-0.9
5,652,809	+				-0.1
5,652,810	-				-1.1
5,652,815	+				+0.1
5,652,816	-				-1.3
5,652,886	-				+0.3
5,653,008	+				+0.5