Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3756

Experiment: BHIS with Chenodeoxycholic 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Chenodeoxycholic 0.25 mg/ml
4,876,041	+		BT3755	0.44	-1.7
4,876,041	+		BT3755	0.44	+0.1
4,876,042	-		BT3755	0.44	-0.1
4,876,042	-		BT3755	0.44	-0.0
4,876,042	-		BT3755	0.44	-0.1
4,876,042	-		BT3755	0.44	-0.5
4,876,045	+		BT3755	0.45	-1.8
4,876,045	+		BT3755	0.45	-2.6
4,876,045	+		BT3755	0.45	+0.6
4,876,046	-		BT3755	0.45	-1.3
4,876,162	-		BT3755	0.52	-2.1
4,876,312	+		BT3755	0.61	+0.1
4,876,312	+		BT3755	0.61	-0.5
4,876,313	-		BT3755	0.61	+0.8
4,876,326	-		BT3755	0.61	-2.4
4,876,333	+		BT3755	0.62	-0.5
4,876,334	-		BT3755	0.62	+0.4
4,876,334	-		BT3755	0.62	-0.1
4,876,387	+		BT3755	0.65	-1.5
4,876,588	-		BT3755	0.77	-3.4
4,876,588	-		BT3755	0.77	-1.0
4,876,595	-		BT3755	0.78	+1.0
4,876,646	-		BT3755	0.81	+0.0
4,876,737	+		BT3755	0.86	-2.0
4,876,856	+				+0.0
4,876,857	-				-2.0
4,876,859	+				-0.9
4,876,896	-				-1.5
4,876,937	-				-2.0
4,876,937	-				-2.0
4,876,937	-				-1.1
4,876,958	+				-2.3
4,876,958	+				-1.8
4,876,959	-				-1.5
4,876,977	-				-2.7
4,877,047	+		BT3756	0.14	-3.8
4,877,102	+		BT3756	0.24	-0.4
4,877,149	+				+1.0
4,877,355	-		BT3756	0.69	-1.0
4,877,362	-		BT3756	0.70	-2.0
4,877,375	+		BT3756	0.73	-2.5
4,877,375	+		BT3756	0.73	-2.7
4,877,376	-		BT3756	0.73	-1.1
4,877,417	-		BT3756	0.80	-3.6
4,877,430	+		BT3756	0.83	-0.1
4,877,463	+		BT3756	0.89	-2.1
4,877,463	+		BT3756	0.89	-2.0
4,877,473	-				-2.8
4,877,510	+				-0.7
4,877,566	+				-2.1
4,877,643	-		BT3757	0.10	-0.2
4,877,659	+		BT3757	0.12	-1.0
4,877,706	+		BT3757	0.18	-1.9
4,877,737	-		BT3757	0.22	+0.6
4,877,737	-		BT3757	0.22	-2.7
4,877,803	+		BT3757	0.31	-3.9
4,877,816	-		BT3757	0.32	-1.5
4,877,909	+		BT3757	0.44	-3.0
4,878,244	-		BT3757	0.88	-3.0
4,878,244	-		BT3757	0.88	-0.4
4,878,251	+		BT3757	0.89	-1.2
4,878,251	+		BT3757	0.89	-1.0
4,878,296	+				-0.0
4,878,326	+				-1.1
4,878,330	+				-2.4
4,878,358	+				-3.0
4,878,359	-				-1.3
4,878,365	-				+0.2
4,878,383	-				+0.2
4,878,414	-				-1.5
4,878,458	-				-2.1
4,878,476	-				-1.8
4,878,481	-				+0.0