Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3551

Experiment: BHIS with Chenodeoxycholic 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Chenodeoxycholic 0.25 mg/ml
4,590,775	+		BT3550	0.56	-1.6
4,590,934	-		BT3550	0.65	-1.0
4,590,944	+		BT3550	0.65	-1.8
4,590,949	+		BT3550	0.65	+0.0
4,591,049	-		BT3550	0.71	-2.5
4,591,051	+		BT3550	0.71	-1.3
4,591,051	+		BT3550	0.71	-1.6
4,591,189	+		BT3550	0.79	-0.8
4,591,190	-		BT3550	0.79	+1.0
4,591,227	-		BT3550	0.81	-2.5
4,591,234	+		BT3550	0.81	-2.4
4,591,234	+		BT3550	0.81	-2.9
4,591,498	-				-0.8
4,591,561	+				-3.4
4,591,674	+				-3.9
4,591,675	-				-1.2
4,591,699	-				-0.1
4,591,764	-				+0.2
4,591,801	+				-1.8
4,591,808	-				-1.3
4,591,862	+				-1.8
4,591,862	+				+0.0
4,591,930	+				-0.1
4,591,983	+				+0.2
4,592,051	+		BT3551	0.11	-0.2
4,592,097	-		BT3551	0.13	-2.7
4,592,097	-		BT3551	0.13	-1.4
4,592,097	-		BT3551	0.13	-0.2
4,592,101	-		BT3551	0.13	-1.2
4,592,105	+		BT3551	0.13	-2.7
4,592,105	+		BT3551	0.13	-1.6
4,592,107	+		BT3551	0.13	-0.6
4,592,108	-		BT3551	0.13	+0.4
4,592,113	+		BT3551	0.13	-3.3
4,592,114	-		BT3551	0.13	-2.8
4,592,137	-		BT3551	0.14	-2.4
4,592,228	-		BT3551	0.17	-1.0
4,592,229	+		BT3551	0.17	-2.1
4,592,248	-		BT3551	0.18	+0.9
4,592,291	+		BT3551	0.19	-2.1
4,592,292	-		BT3551	0.19	-1.2
4,592,293	+		BT3551	0.19	-1.6
4,592,294	-		BT3551	0.19	+0.2
4,592,294	-		BT3551	0.19	-1.0
4,592,294	-		BT3551	0.19	-1.3
4,592,375	+		BT3551	0.22	+0.1
4,592,404	+		BT3551	0.23	-1.6
4,592,452	+		BT3551	0.24	-2.2
4,592,452	+		BT3551	0.24	-4.0
4,592,453	-		BT3551	0.24	-0.1
4,592,453	-		BT3551	0.24	-1.0
4,592,471	-		BT3551	0.25	-0.3
4,592,569	+		BT3551	0.28	-1.0
4,592,570	-		BT3551	0.28	-2.2
4,592,578	+		BT3551	0.28	+0.1
4,592,640	+		BT3551	0.30	+0.3
4,592,694	+		BT3551	0.32	-1.5
4,592,707	-		BT3551	0.32	-1.9
4,592,755	+		BT3551	0.34	-0.2
4,592,783	-		BT3551	0.35	-2.1
4,592,860	+		BT3551	0.37	-0.6
4,592,897	+		BT3551	0.39	-1.8
4,592,897	+		BT3551	0.39	-1.9
4,592,915	-		BT3551	0.39	-2.4
4,592,953	+		BT3551	0.40	+0.0
4,592,953	+		BT3551	0.40	-0.6
4,593,056	+		BT3551	0.44	-1.3
4,593,057	-		BT3551	0.44	+0.0
4,593,098	+		BT3551	0.45	-1.3
4,593,152	-		BT3551	0.47	-0.8
4,593,152	-		BT3551	0.47	-0.2
4,593,181	+		BT3551	0.48	-0.1
4,593,222	-		BT3551	0.49	-1.3
4,593,332	-		BT3551	0.53	-0.3
4,593,350	+		BT3551	0.53	-2.6
4,593,505	+		BT3551	0.58	-2.1
4,593,505	+		BT3551	0.58	-3.4
4,593,506	-		BT3551	0.58	-2.8
4,593,506	-		BT3551	0.58	+1.3
4,593,568	+		BT3551	0.60	-1.3
4,593,568	+		BT3551	0.60	-2.1
4,593,569	-		BT3551	0.60	+0.0
4,593,571	-		BT3551	0.60	-3.0
4,593,571	-		BT3551	0.60	-0.7
4,593,573	+		BT3551	0.60	-1.0
4,593,663	+		BT3551	0.63	-2.3
4,593,663	+		BT3551	0.63	-1.5
4,593,804	-		BT3551	0.68	-2.7
4,593,819	-		BT3551	0.68	-3.2
4,593,845	-		BT3551	0.69	-2.4
4,593,997	+		BT3551	0.74	+0.1
4,594,105	+		BT3551	0.78	-0.3
4,594,119	+		BT3551	0.78	-2.1
4,594,120	+		BT3551	0.78	-2.6
4,594,120	+		BT3551	0.78	-2.0
4,594,130	-		BT3551	0.78	-1.3
4,594,207	+		BT3551	0.81	-2.3
4,594,232	-		BT3551	0.82	-0.0
4,594,321	+		BT3551	0.85	-0.8
4,594,322	-		BT3551	0.85	-1.8
4,594,337	-		BT3551	0.85	-2.6
4,594,538	-				-2.0
4,594,541	+				+0.7
4,594,541	+				-1.0
4,594,543	+				-1.1
4,594,543	+				-0.5
4,594,543	+				-0.1
4,594,544	-				-1.3
4,594,594	-				-1.8
4,594,623	-				-3.9