Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3071

Experiment: BHIS with Chenodeoxycholic 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Chenodeoxycholic 0.25 mg/ml
3,894,336	+		BT3070	0.14	+0.2
3,894,336	+		BT3070	0.14	+0.6
3,894,389	-		BT3070	0.18	-1.1
3,894,495	+		BT3070	0.28	+0.2
3,894,607	+		BT3070	0.39	-1.4
3,894,618	+		BT3070	0.40	-0.1
3,894,738	+		BT3070	0.51	+0.6
3,894,756	-		BT3070	0.53	+1.4
3,894,759	+		BT3070	0.53	+0.7
3,894,759	+		BT3070	0.53	+0.4
3,894,760	-		BT3070	0.53	+1.8
3,894,831	+		BT3070	0.60	-2.6
3,894,832	-		BT3070	0.60	-3.0
3,894,862	+		BT3070	0.62	+0.4
3,894,865	+		BT3070	0.63	-1.8
3,894,866	-		BT3070	0.63	-1.3
3,894,866	-		BT3070	0.63	+0.1
3,894,887	-		BT3070	0.65	+0.2
3,894,887	-		BT3070	0.65	-1.3
3,894,923	+		BT3070	0.68	-4.0
3,894,923	+		BT3070	0.68	-0.3
3,894,923	+		BT3070	0.68	-1.3
3,894,930	+		BT3070	0.69	-2.0
3,894,954	+		BT3070	0.71	+0.7
3,894,993	-		BT3070	0.75	-1.8
3,895,281	+				-0.3
3,895,281	+				-2.3
3,895,281	+				-0.4
3,895,285	+				-1.0
3,895,286	-				-1.3
3,895,352	+		BT3071	0.11	-0.3
3,895,377	+		BT3071	0.17	-2.0
3,895,430	+		BT3071	0.30	-1.6
3,895,430	+		BT3071	0.30	-1.1
3,895,439	-		BT3071	0.32	-2.7
3,895,444	-		BT3071	0.34	-0.8
3,895,447	+		BT3071	0.34	+0.2
3,895,471	+		BT3071	0.40	-2.8
3,895,471	+		BT3071	0.40	-0.8
3,895,472	-				+0.2
3,895,523	+		BT3071	0.53	-2.0
3,895,529	+		BT3071	0.55	-3.0
3,895,529	+		BT3071	0.55	-3.0
3,895,529	+		BT3071	0.55	-1.8
3,895,530	-		BT3071	0.55	-2.8
3,895,530	-		BT3071	0.55	+0.7
3,895,530	-		BT3071	0.55	-1.3
3,895,577	+		BT3071	0.66	-2.6
3,895,585	-		BT3071	0.68	-2.8
3,895,701	-				+0.2
3,895,703	-				-0.0
3,895,740	-				-0.2
3,895,781	+				-0.8
3,895,804	-				+0.2
3,895,889	+		BT3072	0.13	-1.9
3,895,935	+		BT3072	0.17	-0.2
3,895,935	+		BT3072	0.17	-2.2
3,895,936	-		BT3072	0.17	+0.2
3,895,990	+		BT3072	0.21	-1.3
3,896,011	+		BT3072	0.23	+0.2
3,896,080	+		BT3072	0.28	-0.6
3,896,157	-		BT3072	0.34	-0.3
3,896,188	+		BT3072	0.37	-1.8
3,896,204	+		BT3072	0.38	+0.1
3,896,213	-		BT3072	0.39	-0.8
3,896,213	-		BT3072	0.39	+1.2
3,896,391	-		BT3072	0.53	-0.6
3,896,391	-		BT3072	0.53	-1.0
3,896,438	-		BT3072	0.56	-0.8
3,896,519	+		BT3072	0.63	-0.9
3,896,520	-		BT3072	0.63	-0.2
3,896,543	-		BT3072	0.64	+0.1
3,896,683	+		BT3072	0.75	+0.8