Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2660

Experiment: BHIS with Chenodeoxycholic 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Chenodeoxycholic 0.25 mg/ml
3,314,569	+		BT2659	0.36	+0.5
3,314,607	-		BT2659	0.39	-0.1
3,314,617	+		BT2659	0.40	-1.5
3,314,618	-		BT2659	0.40	-2.2
3,314,730	-		BT2659	0.48	-2.4
3,314,733	+		BT2659	0.49	-1.4
3,314,733	+		BT2659	0.49	-0.4
3,314,733	+		BT2659	0.49	+0.2
3,314,828	-		BT2659	0.56	-0.8
3,314,828	-		BT2659	0.56	-0.4
3,314,863	+		BT2659	0.58	-1.4
3,314,864	-		BT2659	0.58	-0.8
3,314,866	+		BT2659	0.59	+0.4
3,314,866	+		BT2659	0.59	+0.2
3,314,866	+		BT2659	0.59	+0.5
3,314,869	+		BT2659	0.59	-2.3
3,314,869	+		BT2659	0.59	-0.5
3,314,869	+		BT2659	0.59	-2.2
3,314,869	+		BT2659	0.59	+0.3
3,314,870	-		BT2659	0.59	-2.3
3,314,882	+		BT2659	0.60	-2.5
3,315,136	-		BT2659	0.79	-1.8
3,315,148	+		BT2659	0.80	-0.7
3,315,149	-		BT2659	0.80	-0.8
3,315,167	+		BT2659	0.81	-2.2
3,315,263	+		BT2659	0.88	-2.8
3,315,264	-		BT2659	0.88	-1.2
3,315,278	-		BT2659	0.89	-0.8
3,315,295	+				+0.4
3,315,295	+				-1.0
3,315,401	+				-0.4
3,315,422	+				-2.2
3,315,455	+				-0.4
3,315,469	+				-0.2
3,315,469	+				-0.7
3,315,469	+				-2.2
3,315,470	-				-2.5
3,315,494	-				-0.2
3,315,564	+				-0.1
3,315,615	+		BT2660	0.16	-1.6
3,315,700	-		BT2660	0.31	-1.6
3,315,700	-		BT2660	0.31	-1.9
3,315,755	+		BT2660	0.40	-1.5
3,315,802	+		BT2660	0.48	-2.7
3,315,802	+		BT2660	0.48	-4.6
3,315,802	+		BT2660	0.48	-0.3
3,315,804	+		BT2660	0.48	-1.4
3,315,805	-		BT2660	0.49	+0.8
3,315,901	+		BT2660	0.65	-1.3
3,315,930	+		BT2660	0.70	-3.7
3,315,930	+		BT2660	0.70	-2.2
3,315,931	-		BT2660	0.70	-1.6
3,315,934	+		BT2660	0.70	+0.7
3,316,001	-		BT2660	0.82	-1.5
3,316,008	+		BT2660	0.83	+0.2
3,316,008	+		BT2660	0.83	-1.6
3,316,009	-		BT2660	0.83	+1.2
3,316,031	+		BT2660	0.87	-1.5
3,316,128	+				-0.2
3,316,153	+				-1.1
3,316,176	+				+0.6
3,316,321	+				-0.4
3,316,368	-				-1.2
3,316,372	-				+0.2
3,316,507	+				-1.5
3,316,518	+		BT2661	0.14	+1.2
3,316,529	+		BT2661	0.20	-1.1
3,316,530	-		BT2661	0.21	-0.8
3,316,538	+		BT2661	0.25	-2.3
3,316,571	+		BT2661	0.42	-2.9
3,316,650	+		BT2661	0.82	+0.3
3,316,652	+		BT2661	0.83	+0.3
3,316,664	+				+0.2
3,316,672	+				-0.4
3,316,685	+				-0.7
3,316,717	+				+1.2
3,316,798	+				+0.3
3,316,895	+				-1.2
3,317,038	-				+0.5
3,317,063	+				-0.8
3,317,105	+				+0.2