Experiment: BHIS with Chenodeoxycholic 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0637 and BT0638 overlap by 1 nucleotides BT0638 and BT0639 are separated by 12 nucleotides BT0639 and BT0640 are separated by 356 nucleotides
BT0637: BT0637 - conserved hypothetical protein (NCBI ptt file), at 785,311 to 786,540
BT0637
BT0638: BT0638 - putative methionine aminopeptidase A (NCBI ptt file), at 786,540 to 787,463
BT0638
BT0639: BT0639 - conserved hypothetical protein (NCBI ptt file), at 787,476 to 788,102
BT0639
BT0640: BT0640 - Fe-S oxidoreductases family 2 (NCBI ptt file), at 788,459 to 790,102
BT0640
Position (kb) 787
788
789 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 786.523 kb on - strand at 786.523 kb on - strand at 786.526 kb on + strand at 786.544 kb on + strand at 786.545 kb on - strand at 786.661 kb on + strand, within BT0638 at 786.778 kb on - strand, within BT0638 at 786.957 kb on - strand, within BT0638 at 786.963 kb on - strand, within BT0638 at 787.008 kb on + strand, within BT0638 at 787.008 kb on + strand, within BT0638 at 787.112 kb on - strand, within BT0638 at 787.211 kb on + strand, within BT0638 at 787.214 kb on - strand, within BT0638 at 787.400 kb on + strand at 787.437 kb on + strand at 787.549 kb on - strand, within BT0639 at 787.575 kb on - strand, within BT0639 at 787.670 kb on - strand, within BT0639 at 787.670 kb on - strand, within BT0639 at 787.671 kb on + strand, within BT0639 at 787.672 kb on - strand, within BT0639 at 787.672 kb on - strand, within BT0639 at 787.701 kb on - strand, within BT0639 at 787.866 kb on + strand, within BT0639 at 787.866 kb on + strand, within BT0639 at 787.867 kb on - strand, within BT0639 at 787.880 kb on + strand, within BT0639 at 787.927 kb on + strand, within BT0639 at 787.930 kb on - strand, within BT0639 at 788.079 kb on + strand at 788.079 kb on + strand at 788.091 kb on - strand at 788.092 kb on + strand at 788.105 kb on - strand at 788.180 kb on + strand at 788.217 kb on - strand at 788.224 kb on + strand at 788.225 kb on - strand at 788.271 kb on + strand at 788.272 kb on - strand at 788.272 kb on - strand at 788.291 kb on + strand at 788.301 kb on + strand at 788.348 kb on + strand at 788.378 kb on + strand at 788.386 kb on - strand at 788.427 kb on - strand at 788.433 kb on + strand at 788.460 kb on + strand at 788.460 kb on + strand at 788.493 kb on - strand at 788.590 kb on - strand at 788.666 kb on - strand, within BT0640 at 788.676 kb on - strand, within BT0640 at 788.687 kb on - strand, within BT0640 at 788.740 kb on + strand, within BT0640 at 788.792 kb on + strand, within BT0640 at 788.805 kb on - strand, within BT0640 at 788.843 kb on - strand, within BT0640 at 788.974 kb on - strand, within BT0640 at 789.023 kb on + strand, within BT0640 at 789.030 kb on - strand, within BT0640
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Chenodeoxycholic 0.25 mg/ml remove 786,523 - -2.8 786,523 - -1.8 786,526 + -1.5 786,544 + -1.4 786,545 - -0.7 786,661 + BT0638 0.13 -1.8 786,778 - BT0638 0.26 -0.2 786,957 - BT0638 0.45 -0.5 786,963 - BT0638 0.46 -1.8 787,008 + BT0638 0.51 -2.4 787,008 + BT0638 0.51 -3.1 787,112 - BT0638 0.62 -2.4 787,211 + BT0638 0.73 -2.7 787,214 - BT0638 0.73 -2.2 787,400 + -0.8 787,437 + -0.7 787,549 - BT0639 0.12 -1.2 787,575 - BT0639 0.16 +0.4 787,670 - BT0639 0.31 -2.8 787,670 - BT0639 0.31 -1.5 787,671 + BT0639 0.31 -2.7 787,672 - BT0639 0.31 -0.9 787,672 - BT0639 0.31 -0.8 787,701 - BT0639 0.36 -0.2 787,866 + BT0639 0.62 -1.5 787,866 + BT0639 0.62 -0.2 787,867 - BT0639 0.62 -2.8 787,880 + BT0639 0.64 -0.8 787,927 + BT0639 0.72 +0.2 787,930 - BT0639 0.72 -1.5 788,079 + -0.8 788,079 + -0.2 788,091 - -1.6 788,092 + +0.5 788,105 - +0.8 788,180 + -2.5 788,217 - -1.2 788,224 + -1.2 788,225 - -1.8 788,271 + -0.5 788,272 - -0.8 788,272 - -0.8 788,291 + -1.1 788,301 + -1.2 788,348 + -1.8 788,378 + -1.5 788,386 - -2.0 788,427 - -2.2 788,433 + -3.0 788,460 + +0.2 788,460 + +0.8 788,493 - -1.2 788,590 - -2.2 788,666 - BT0640 0.13 -0.8 788,676 - BT0640 0.13 +0.8 788,687 - BT0640 0.14 -2.9 788,740 + BT0640 0.17 -1.9 788,792 + BT0640 0.20 -2.0 788,805 - BT0640 0.21 +3.1 788,843 - BT0640 0.23 +0.1 788,974 - BT0640 0.31 -1.5 789,023 + BT0640 0.34 -0.0 789,030 - BT0640 0.35 +0.1
Or see this region's nucleotide sequence