Experiment: BHIS with Chenodeoxycholic 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0510 and BT0511 overlap by 4 nucleotides BT0511 and BT0512 are separated by 38 nucleotides BT0512 and BT0513 are separated by 44 nucleotides
BT0510: BT0510 - putative heme biosynthesis protein (NCBI ptt file), at 633,782 to 634,882
BT0510
BT0511: BT0511 - hypothetical protein (NCBI ptt file), at 634,879 to 635,331
BT0511
BT0512: BT0512 - hypothetical protein (NCBI ptt file), at 635,370 to 635,939
BT0512
BT0513: BT0513 - hypothetical protein (NCBI ptt file), at 635,984 to 636,415
BT0513
Position (kb) 634
635
636 Strain fitness (log2 ratio) -2
-1
0
1 at 633.962 kb on + strand, within BT0510 at 633.962 kb on + strand, within BT0510 at 633.988 kb on + strand, within BT0510 at 634.091 kb on - strand, within BT0510 at 634.097 kb on + strand, within BT0510 at 634.111 kb on - strand, within BT0510 at 634.262 kb on + strand, within BT0510 at 634.263 kb on - strand, within BT0510 at 634.291 kb on + strand, within BT0510 at 634.373 kb on - strand at 634.475 kb on - strand, within BT0510 at 634.475 kb on - strand, within BT0510 at 634.477 kb on + strand, within BT0510 at 634.602 kb on - strand, within BT0510 at 634.602 kb on - strand, within BT0510 at 634.624 kb on + strand, within BT0510 at 634.635 kb on - strand, within BT0510 at 634.635 kb on - strand, within BT0510 at 634.839 kb on - strand at 634.873 kb on + strand at 634.905 kb on + strand at 634.909 kb on + strand at 634.910 kb on - strand at 634.964 kb on + strand, within BT0511 at 635.049 kb on + strand, within BT0511 at 635.060 kb on - strand, within BT0511 at 635.060 kb on - strand, within BT0511 at 635.074 kb on - strand, within BT0511 at 635.075 kb on + strand, within BT0511 at 635.076 kb on - strand, within BT0511 at 635.083 kb on + strand, within BT0511 at 635.206 kb on + strand, within BT0511 at 635.241 kb on - strand, within BT0511 at 635.338 kb on - strand at 635.368 kb on - strand at 635.524 kb on - strand, within BT0512 at 635.534 kb on + strand, within BT0512 at 635.534 kb on + strand, within BT0512 at 635.536 kb on + strand, within BT0512 at 635.597 kb on - strand, within BT0512 at 635.597 kb on - strand, within BT0512 at 635.607 kb on - strand, within BT0512 at 635.615 kb on + strand, within BT0512 at 635.763 kb on - strand, within BT0512 at 635.840 kb on + strand, within BT0512 at 635.854 kb on - strand, within BT0512 at 635.854 kb on - strand, within BT0512 at 635.939 kb on + strand at 635.943 kb on + strand at 636.008 kb on + strand at 636.093 kb on - strand, within BT0513 at 636.269 kb on + strand, within BT0513 at 636.274 kb on + strand, within BT0513 at 636.275 kb on - strand, within BT0513 at 636.280 kb on - strand, within BT0513
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Chenodeoxycholic 0.25 mg/ml remove 633,962 + BT0510 0.16 -0.8 633,962 + BT0510 0.16 -0.5 633,988 + BT0510 0.19 -1.1 634,091 - BT0510 0.28 +1.0 634,097 + BT0510 0.29 -1.0 634,111 - BT0510 0.30 -0.8 634,262 + BT0510 0.44 -1.2 634,263 - BT0510 0.44 +0.1 634,291 + BT0510 0.46 +0.8 634,373 - +0.8 634,475 - BT0510 0.63 +0.2 634,475 - BT0510 0.63 +0.1 634,477 + BT0510 0.63 -2.0 634,602 - BT0510 0.74 -0.4 634,602 - BT0510 0.74 -1.8 634,624 + BT0510 0.76 -0.8 634,635 - BT0510 0.77 -0.8 634,635 - BT0510 0.77 -0.4 634,839 - +1.4 634,873 + -0.9 634,905 + -0.1 634,909 + -0.8 634,910 - -2.2 634,964 + BT0511 0.19 -0.2 635,049 + BT0511 0.38 -2.4 635,060 - BT0511 0.40 +0.2 635,060 - BT0511 0.40 -2.2 635,074 - BT0511 0.43 -2.0 635,075 + BT0511 0.43 -2.5 635,076 - BT0511 0.43 +0.8 635,083 + BT0511 0.45 -2.1 635,206 + BT0511 0.72 -0.5 635,241 - BT0511 0.80 -2.0 635,338 - -2.4 635,368 - -0.8 635,524 - BT0512 0.27 -0.8 635,534 + BT0512 0.29 +0.1 635,534 + BT0512 0.29 +0.5 635,536 + BT0512 0.29 -0.2 635,597 - BT0512 0.40 -1.5 635,597 - BT0512 0.40 -1.1 635,607 - BT0512 0.42 -1.8 635,615 + BT0512 0.43 -0.8 635,763 - BT0512 0.69 -0.8 635,840 + BT0512 0.82 -1.8 635,854 - BT0512 0.85 +1.4 635,854 - BT0512 0.85 -1.1 635,939 + -2.0 635,943 + -0.2 636,008 + -0.6 636,093 - BT0513 0.25 -2.0 636,269 + BT0513 0.66 -0.2 636,274 + BT0513 0.67 -1.5 636,275 - BT0513 0.67 +1.4 636,280 - BT0513 0.69 -0.2
Or see this region's nucleotide sequence