Experiment: BHIS with Chenodeoxycholic 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0296 and BT0297 are separated by 20 nucleotides BT0297 and BT0298 are separated by 7 nucleotides
BT0296: BT0296 - putative xanthan lyase XalB precursor (NCBI ptt file), at 345,748 to 349,053
BT0296
BT0297: BT0297 - putative outer membrane lipoprotein silC precursor (NCBI ptt file), at 349,074 to 350,570
BT0297
BT0298: BT0298 - cation efflux system protein (outer membrane protein) (NCBI ptt file), at 350,578 to 351,639
BT0298
Position (kb) 349
350
351 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 348.119 kb on - strand, within BT0296 at 348.247 kb on - strand, within BT0296 at 348.355 kb on - strand, within BT0296 at 348.355 kb on - strand, within BT0296 at 348.503 kb on - strand, within BT0296 at 348.544 kb on - strand, within BT0296 at 348.610 kb on - strand, within BT0296 at 348.634 kb on - strand, within BT0296 at 348.691 kb on - strand, within BT0296 at 348.721 kb on - strand, within BT0296 at 348.734 kb on - strand at 348.913 kb on - strand at 348.958 kb on + strand at 349.005 kb on + strand at 349.072 kb on - strand at 349.072 kb on - strand at 349.093 kb on + strand at 349.096 kb on + strand at 349.277 kb on - strand, within BT0297 at 349.315 kb on - strand, within BT0297 at 349.357 kb on - strand, within BT0297 at 349.425 kb on - strand, within BT0297 at 349.475 kb on - strand, within BT0297 at 349.518 kb on + strand, within BT0297 at 349.539 kb on - strand, within BT0297 at 349.579 kb on + strand, within BT0297 at 349.604 kb on + strand, within BT0297 at 349.682 kb on + strand, within BT0297 at 349.729 kb on - strand, within BT0297 at 350.002 kb on + strand, within BT0297 at 350.359 kb on - strand, within BT0297 at 350.480 kb on - strand at 350.485 kb on + strand at 350.668 kb on - strand at 350.730 kb on + strand, within BT0298 at 350.756 kb on - strand, within BT0298 at 350.756 kb on - strand, within BT0298 at 350.864 kb on + strand, within BT0298 at 351.007 kb on - strand, within BT0298 at 351.172 kb on + strand, within BT0298 at 351.185 kb on - strand, within BT0298 at 351.247 kb on - strand, within BT0298 at 351.507 kb on - strand, within BT0298 at 351.539 kb on - strand at 351.539 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Chenodeoxycholic 0.25 mg/ml remove 348,119 - BT0296 0.72 -1.8 348,247 - BT0296 0.76 -0.4 348,355 - BT0296 0.79 -0.1 348,355 - BT0296 0.79 -0.2 348,503 - BT0296 0.83 -1.5 348,544 - BT0296 0.85 -0.5 348,610 - BT0296 0.87 +0.4 348,634 - BT0296 0.87 -1.8 348,691 - BT0296 0.89 -1.8 348,721 - BT0296 0.90 -0.7 348,734 - -1.5 348,913 - +0.1 348,958 + -1.8 349,005 + +1.1 349,072 - -0.8 349,072 - -0.2 349,093 + +0.8 349,096 + -1.8 349,277 - BT0297 0.14 -1.0 349,315 - BT0297 0.16 -2.6 349,357 - BT0297 0.19 +1.2 349,425 - BT0297 0.23 -2.2 349,475 - BT0297 0.27 -2.6 349,518 + BT0297 0.30 +1.8 349,539 - BT0297 0.31 -0.8 349,579 + BT0297 0.34 -2.9 349,604 + BT0297 0.35 -3.0 349,682 + BT0297 0.41 -2.0 349,729 - BT0297 0.44 -2.2 350,002 + BT0297 0.62 -0.8 350,359 - BT0297 0.86 -2.3 350,480 - -2.0 350,485 + -1.2 350,668 - +0.8 350,730 + BT0298 0.14 +3.0 350,756 - BT0298 0.17 -2.8 350,756 - BT0298 0.17 -1.5 350,864 + BT0298 0.27 -0.5 351,007 - BT0298 0.40 +1.4 351,172 + BT0298 0.56 +0.8 351,185 - BT0298 0.57 -1.8 351,247 - BT0298 0.63 -1.2 351,507 - BT0298 0.87 -3.4 351,539 - -0.8 351,539 - -1.8
Or see this region's nucleotide sequence