Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0090

Experiment: BHIS with Chenodeoxycholic 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Chenodeoxycholic 0.25 mg/ml
82,477	+		BT0088	0.16	-1.9
82,523	+		BT0088	0.31	-2.8
82,628	+		BT0088	0.66	-1.2
82,807	+		BT0089	0.11	-0.8
82,810	+		BT0089	0.12	-1.1
82,949	+		BT0089	0.34	-0.8
82,949	+		BT0089	0.34	-1.5
82,992	+		BT0089	0.41	-0.6
83,373	+				-0.2
83,390	+				-3.2
83,465	-				-0.8
83,567	+		BT0090	0.19	-0.8
83,572	+		BT0090	0.19	-1.8
83,650	+		BT0090	0.27	-2.7
83,650	+		BT0090	0.27	-1.2
83,721	+		BT0090	0.34	-1.2
83,763	+		BT0090	0.38	-2.6
83,763	+		BT0090	0.38	-1.8
83,764	-		BT0090	0.38	-0.2
83,764	-		BT0090	0.38	-1.2
83,765	+		BT0090	0.38	-3.0
83,766	-		BT0090	0.38	-3.2
84,045	+		BT0090	0.66	-0.5
84,046	-		BT0090	0.66	-2.2
84,106	+		BT0090	0.72	-0.8
84,112	+		BT0090	0.72	-1.5
84,151	+		BT0090	0.76	-1.8
84,179	-		BT0090	0.79	-1.8
84,271	-		BT0090	0.88	-1.8
84,271	-		BT0090	0.88	+0.4
84,271	-		BT0090	0.88	-1.8
84,338	-				-1.5
84,397	+				-1.8
84,398	-				+1.2
84,417	+				-1.0
84,444	+				-0.9
84,520	-		BT0091	0.17	-2.0
84,556	+		BT0091	0.22	+0.1
84,558	+		BT0091	0.23	-1.2
84,559	-		BT0091	0.23	-1.8
84,672	+		BT0091	0.41	-0.5
84,673	-		BT0091	0.41	-1.1
84,678	+		BT0091	0.42	-2.8
84,748	-		BT0091	0.53	-0.8
84,815	-		BT0091	0.63	-2.5
84,893	-		BT0091	0.76	-1.8
85,029	-				-1.2
85,081	+				+0.6
85,189	+		BT0092	0.39	-3.8
85,371	+				-3.1