Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0013

Experiment: BHIS with Chenodeoxycholic 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Chenodeoxycholic 0.25 mg/ml
9,216	-		BT0012	0.20	-2.0
9,292	-		BT0012	0.26	-2.0
9,416	+		BT0012	0.37	-2.6
9,417	-		BT0012	0.37	-2.0
9,559	-		BT0012	0.49	-2.3
9,580	+		BT0012	0.51	-2.3
9,586	-		BT0012	0.52	-1.8
9,645	+		BT0012	0.57	-1.2
9,645	+		BT0012	0.57	-1.2
9,646	-		BT0012	0.57	-2.3
9,686	-		BT0012	0.60	+0.8
9,704	-		BT0012	0.62	-2.3
9,714	+		BT0012	0.63	+0.8
9,714	+		BT0012	0.63	-0.2
9,793	-		BT0012	0.69	-0.2
9,834	+		BT0012	0.73	-0.8
9,877	-		BT0012	0.77	-1.5
9,877	-		BT0012	0.77	-1.6
9,983	-		BT0012	0.86	-0.8
10,265	-		BT0013	0.15	-0.5
10,398	-		BT0013	0.40	-2.1
10,422	+		BT0013	0.44	-2.2
10,720	-				-3.6
10,758	+				-2.3
10,787	+				-1.5
10,788	-				-2.3
10,866	-				-1.2
10,888	-				-0.5
10,900	+				+0.6
10,943	+				-0.2
10,944	-				-0.6
10,944	-				-0.2
11,343	+		BT0014	0.19	-2.0
11,698	-		BT0014	0.33	+0.8