Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around p5482_17

Experiment: BHIS with Chenodeoxycholic 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Chenodeoxycholic 0.25 mg/ml
15,738	+		p5482_16	0.63	-2.2
15,739	-		p5482_16	0.63	-3.3
15,740	+		p5482_16	0.63	-4.8
15,740	+		p5482_16	0.63	-2.8
15,740	+		p5482_16	0.63	-2.1
15,741	-		p5482_16	0.63	-1.7
15,741	-		p5482_16	0.63	-2.7
15,741	-		p5482_16	0.63	+0.7
15,741	-		p5482_16	0.63	-1.7
15,741	-		p5482_16	0.63	+0.3
15,741	-		p5482_16	0.63	-4.6
15,743	-				+0.1
15,815	-		p5482_16	0.70	+0.7
15,817	-		p5482_16	0.70	-3.6
15,817	-		p5482_16	0.70	-0.5
15,817	-		p5482_16	0.70	-2.3
15,817	-		p5482_16	0.70	-1.5
15,817	-		p5482_16	0.70	-3.1
15,817	-		p5482_16	0.70	-2.5
15,819	-		p5482_16	0.71	-2.1
15,819	-		p5482_16	0.71	-2.6
15,819	-		p5482_16	0.71	-1.5
15,873	-		p5482_16	0.76	+1.2
15,873	-		p5482_16	0.76	-1.9
15,878	-		p5482_16	0.76	-2.8
15,880	-		p5482_16	0.76	-2.4
15,880	-		p5482_16	0.76	+0.9
15,880	-		p5482_16	0.76	+1.1
15,880	-		p5482_16	0.76	-1.6
15,880	-		p5482_16	0.76	-1.3
15,880	-		p5482_16	0.76	-2.2
15,884	+		p5482_16	0.77	+0.5
15,885	-		p5482_16	0.77	-2.5
15,887	-		p5482_16	0.77	-2.2
15,897	-		p5482_16	0.78	+1.1
16,025	-		p5482_16	0.89	-1.5
16,139	+				+0.1
16,140	-				-1.0
16,140	-				-1.2
16,140	-				-0.4
16,234	-				-0.8
16,281	-				+0.9
16,324	-				-1.5
16,424	-				-1.5
16,487	-				-1.0
16,522	-				+0.8
16,522	-				-2.1
16,522	-				-1.9
16,522	-				-1.2
16,522	-				-2.5
16,543	-				-1.1
16,610	+				-0.5
16,630	-				-1.7
16,630	-				-2.8
16,640	-				-2.9
16,657	+				-1.2
16,666	+				-3.2
16,667	-				+0.8
16,686	-				-2.1
16,686	-				+1.0
16,686	-				+0.8
16,689	+				-1.9
16,689	+				-0.2
16,703	+		p5482_17	0.12	+0.1
16,703	+		p5482_17	0.12	-2.7
16,816	+		p5482_17	0.66	-1.7
16,816	+		p5482_17	0.66	-1.5
16,816	+		p5482_17	0.66	+0.4
16,816	+		p5482_17	0.66	+0.5
16,816	+		p5482_17	0.66	-0.9
16,816	+		p5482_17	0.66	-3.4
16,816	+		p5482_17	0.66	+0.7
16,817	-		p5482_17	0.66	+0.8
16,869	+				-2.4
16,870	-				-1.2
16,886	-				-0.5
16,890	+				-1.5
16,898	-				-1.1
16,909	-				-2.0
16,999	+		p5482_18	0.14	+0.8
16,999	+		p5482_18	0.14	-0.7
17,000	-		p5482_18	0.14	-3.1
17,001	+		p5482_18	0.15	-1.5
17,019	+		p5482_18	0.17	+1.1
17,047	+		p5482_18	0.21	-4.1
17,047	+		p5482_18	0.21	-1.0
17,048	-		p5482_18	0.21	-0.9
17,085	+		p5482_18	0.26	-2.7
17,085	+		p5482_18	0.26	-2.1
17,086	-		p5482_18	0.27	+0.9
17,086	-		p5482_18	0.27	-3.0
17,145	-		p5482_18	0.35	+1.2
17,231	+		p5482_18	0.47	-0.9
17,231	+		p5482_18	0.47	+0.4
17,231	+		p5482_18	0.47	+1.1
17,231	+		p5482_18	0.47	+0.6
17,231	+		p5482_18	0.47	-1.2
17,232	-		p5482_18	0.47	-1.2
17,232	-		p5482_18	0.47	-1.5
17,232	-		p5482_18	0.47	+0.8
17,232	-				+0.1
17,232	-		p5482_18	0.47	-0.5
17,232	-		p5482_18	0.47	-1.2
17,232	-		p5482_18	0.47	-1.5
17,232	-		p5482_18	0.47	-0.8
17,232	-		p5482_18	0.47	-2.2
17,308	-		p5482_18	0.58	-2.2
17,308	-		p5482_18	0.58	-1.8
17,308	-		p5482_18	0.58	-0.9
17,313	+		p5482_18	0.59	-1.7
17,313	+		p5482_18	0.59	-1.9
17,313	+		p5482_18	0.59	+0.4
17,314	-		p5482_18	0.59	-1.5
17,314	-		p5482_18	0.59	-1.5
17,314	-		p5482_18	0.59	+0.8
17,339	-		p5482_18	0.62	-1.6
17,339	-		p5482_18	0.62	-1.5
17,339	-		p5482_18	0.62	-3.7
17,339	-		p5482_18	0.62	-0.9
17,367	-		p5482_18	0.66	+0.1
17,438	+		p5482_18	0.76	-2.2
17,440	+		p5482_18	0.77	-1.5
17,441	-		p5482_18	0.77	-1.9
17,441	-		p5482_18	0.77	-0.7
17,441	-		p5482_18	0.77	-3.2
17,441	-		p5482_18	0.77	-1.0
17,583	+				-2.4
17,583	+				+0.6
17,583	+				-1.5
17,584	-				-2.4
17,584	-				+1.4
17,584	-				-0.6
17,584	-				-0.3
17,584	-				-2.6
17,584	-				-2.7
17,590	-				-0.5
17,590	-				-0.9
17,596	-				+0.7
17,610	-				+0.5
17,629	+				-2.4
17,629	+				-1.7
17,670	+		p5482_19	0.12	-1.5
17,670	+		p5482_19	0.12	-3.0
17,671	-		p5482_19	0.12	-1.2
17,671	-		p5482_19	0.12	-2.6
17,671	-		p5482_19	0.12	-1.9
17,671	-		p5482_19	0.12	-3.1
17,671	-		p5482_19	0.12	-1.4
17,685	+		p5482_19	0.15	-2.4
17,685	+		p5482_19	0.15	+0.6
17,686	-		p5482_19	0.15	-1.9
17,687	+		p5482_19	0.15	+0.7
17,687	+		p5482_19	0.15	-2.1
17,688	-		p5482_19	0.15	+1.8
17,706	+		p5482_19	0.19	+0.5
17,707	-		p5482_19	0.19	-0.2
17,709	-		p5482_19	0.20	-2.2
17,709	-		p5482_19	0.20	-3.6
17,757	+		p5482_19	0.29	-1.6
17,757	+		p5482_19	0.29	-2.2
17,757	+		p5482_19	0.29	-3.9
17,757	+		p5482_19	0.29	+1.5
17,758	-		p5482_19	0.29	-4.6
17,786	+		p5482_19	0.35	-1.7
17,787	-		p5482_19	0.35	+1.0
17,787	-		p5482_19	0.35	-3.0
17,787	-		p5482_19	0.35	+1.3
17,787	-		p5482_19	0.35	-1.6
17,787	-		p5482_19	0.35	-1.0
17,853	+		p5482_19	0.48	+0.2
17,854	-		p5482_19	0.48	-2.2
17,856	+		p5482_19	0.49	-2.8
17,856	+		p5482_19	0.49	-1.9
17,856	+		p5482_19	0.49	-2.4
17,857	-		p5482_19	0.49	+0.8