Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around p5482_12

Experiment: BHIS with Chenodeoxycholic 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Chenodeoxycholic 0.25 mg/ml
11,183	-		p5482_11	0.60	-1.7
11,185	-		p5482_11	0.60	+1.2
11,242	-		p5482_11	0.62	+0.6
11,257	-		p5482_11	0.63	-3.0
11,257	-		p5482_11	0.63	-1.9
11,315	-		p5482_11	0.65	-2.6
11,318	-		p5482_11	0.65	+1.2
11,318	-		p5482_11	0.65	-1.4
11,326	-		p5482_11	0.65	-0.9
11,357	-		p5482_11	0.67	-3.3
11,357	-		p5482_11	0.67	-1.2
11,363	-		p5482_11	0.67	-1.9
11,363	-		p5482_11	0.67	-1.3
11,363	-		p5482_11	0.67	+0.3
11,363	-		p5482_11	0.67	+0.6
11,390	-		p5482_11	0.68	-0.5
11,404	-		p5482_11	0.69	-0.9
11,427	-		p5482_11	0.70	-3.4
11,427	-		p5482_11	0.70	-2.5
11,427	-		p5482_11	0.70	-2.1
11,427	-		p5482_11	0.70	-3.5
11,709	-		p5482_11	0.81	-1.6
11,709	-		p5482_11	0.81	-0.5
11,767	-		p5482_11	0.83	-0.7
11,807	-		p5482_11	0.85	-1.9
11,821	-		p5482_11	0.86	+1.8
11,830	-		p5482_11	0.86	-3.2
11,841	-		p5482_11	0.86	-3.4
11,841	-		p5482_11	0.86	-0.8
11,843	-		p5482_11	0.87	-1.4
11,843	-		p5482_11	0.87	+1.2
11,843	-		p5482_11	0.87	-1.7
11,916	-		p5482_11	0.90	-2.2
11,963	-				-1.9
11,973	-				+0.9
11,973	-				+0.1
11,986	-				-1.2
11,992	-				-2.3
11,996	-				-0.2
11,996	-				-1.2
11,996	-				-2.2
11,996	-				-1.7
11,996	-				-1.6
12,086	-				-0.9
12,125	-				+0.5
12,127	-				-2.1
12,127	-				-0.9
12,149	-				-2.0
12,165	+				-1.6
12,166	-				-1.8
12,166	-				-1.7
12,166	-				-0.5
12,169	+				-2.4
12,170	-				+0.2
12,170	-				-1.7
12,195	-				-2.6
12,195	-				-2.1
12,195	-				+1.2
12,246	+		p5482_12	0.17	-4.0
12,275	-		p5482_12	0.22	-0.4
12,284	+		p5482_12	0.24	-0.9
12,284	+		p5482_12	0.24	-2.2
12,285	-		p5482_12	0.24	-1.2
12,285	-		p5482_12	0.24	-2.9
12,285	-		p5482_12	0.24	-1.2
12,285	-		p5482_12	0.24	-1.7
12,321	+		p5482_12	0.30	-1.5
12,321	+		p5482_12	0.30	-0.7
12,321	+		p5482_12	0.30	+0.8
12,321	+		p5482_12	0.30	-0.1
12,321	+		p5482_12	0.30	-2.0
12,322	-		p5482_12	0.30	-3.7
12,322	-		p5482_12	0.30	+1.1
12,322	-		p5482_12	0.30	-2.1
12,322	-		p5482_12	0.30	-0.5
12,322	-		p5482_12	0.30	-2.2
12,322	-		p5482_12	0.30	-1.5
12,322	-		p5482_12	0.30	-1.9
12,328	+		p5482_12	0.31	-2.7
12,376	+		p5482_12	0.40	-2.9
12,376	+		p5482_12	0.40	-1.0
12,377	-		p5482_12	0.40	+1.7
12,483	-		p5482_12	0.59	+1.3
12,484	+		p5482_12	0.59	-0.9
12,484	+		p5482_12	0.59	-2.2
12,485	-		p5482_12	0.59	-0.5
12,485	-		p5482_12	0.59	-1.9
12,485	-		p5482_12	0.59	-2.6
12,485	-		p5482_12	0.59	+1.1
12,485	-		p5482_12	0.59	-0.9
12,593	-		p5482_12	0.78	-3.1
12,658	+		p5482_12	0.89	-0.3
12,658	+		p5482_12	0.89	-5.7
12,659	-		p5482_12	0.89	-1.6
12,659	-		p5482_12	0.89	+0.2
12,661	+		p5482_12	0.90	+0.1
12,661	+		p5482_12	0.90	-1.2
12,678	+				-1.9
12,679	-				+0.0
12,722	+				-2.2
12,723	-				-0.5
12,723	-				-3.8
12,747	-				+0.7
12,753	+				-5.0
12,754	-				+0.5
12,819	-		p5482_13	0.12	-2.0
12,819	-		p5482_13	0.12	-2.8
12,912	+		p5482_13	0.24	-0.8
12,912	+		p5482_13	0.24	-3.1
12,912	+		p5482_13	0.24	+1.1
12,912	+		p5482_13	0.24	-1.7
12,912	+		p5482_13	0.24	-1.1
12,913	-		p5482_13	0.25	-0.6
12,913	-		p5482_13	0.25	-2.1
12,913	-		p5482_13	0.25	-3.7
12,913	-		p5482_13	0.25	-2.0
12,913	-		p5482_13	0.25	-3.0
12,913	-		p5482_13	0.25	+0.4
12,913	-		p5482_13	0.25	-0.9
12,918	+		p5482_13	0.25	-0.5
12,918	+		p5482_13	0.25	-2.8
12,919	-		p5482_13	0.25	-1.1
12,919	-		p5482_13	0.25	-0.7
12,919	-		p5482_13	0.25	+2.1
12,919	-		p5482_13	0.25	+1.3
12,919	-		p5482_13	0.25	-2.6
12,920	+		p5482_13	0.25	-2.5
12,920	+		p5482_13	0.25	-0.9
12,920	+		p5482_13	0.25	-0.4
12,925	-		p5482_13	0.26	-2.3
12,925	-		p5482_13	0.26	-1.3
12,925	-		p5482_13	0.26	-2.3
12,925	-		p5482_13	0.26	+1.0
12,925	-		p5482_13	0.26	-0.9
12,939	-		p5482_13	0.28	+0.9
12,939	-		p5482_13	0.28	-0.0
12,939	-		p5482_13	0.28	+1.8
12,939	-		p5482_13	0.28	+1.0
12,963	-		p5482_13	0.31	-0.9
12,963	-		p5482_13	0.31	+0.5
13,006	+		p5482_13	0.37	-1.7
13,007	-		p5482_13	0.37	-3.1
13,007	-		p5482_13	0.37	+0.4
13,034	-		p5482_13	0.40	-1.5
13,034	-		p5482_13	0.40	-2.7
13,034	-		p5482_13	0.40	-1.1
13,055	-		p5482_13	0.43	-1.2
13,055	-		p5482_13	0.43	-1.8
13,062	-		p5482_13	0.44	+1.5
13,097	+		p5482_13	0.48	-0.5
13,098	-		p5482_13	0.48	-0.7
13,157	+		p5482_13	0.56	-0.6
13,158	-		p5482_13	0.56	-1.6
13,158	-		p5482_13	0.56	-2.4
13,163	-		p5482_13	0.57	-0.6
13,182	+		p5482_13	0.59	-0.9
13,218	+		p5482_13	0.64	-3.1
13,219	-		p5482_13	0.64	+0.7
13,224	-		p5482_13	0.65	+1.0
13,224	-		p5482_13	0.65	-0.3
13,224	-		p5482_13	0.65	-0.3
13,226	-		p5482_13	0.65	-1.6
13,226	-		p5482_13	0.65	-2.1
13,256	-		p5482_13	0.69	+0.5
13,256	-		p5482_13	0.69	-0.2
13,256	-		p5482_13	0.69	-1.9
13,324	-		p5482_13	0.78	-2.2
13,324	-		p5482_13	0.78	-1.0
13,349	-		p5482_13	0.81	-2.6
13,368	-		p5482_13	0.83	-2.2
13,368	-		p5482_13	0.83	+0.2
13,368	-		p5482_13	0.83	-1.9
13,368	-		p5482_13	0.83	+0.1
13,383	-		p5482_13	0.85	-2.2
13,383	-		p5482_13	0.85	-5.0
13,383	-		p5482_13	0.85	-1.7
13,383	-		p5482_13	0.85	-1.3
13,383	-		p5482_13	0.85	-2.3
13,411	-		p5482_13	0.89	-3.8
13,411	-		p5482_13	0.89	+1.3
13,411	-		p5482_13	0.89	-4.1
13,411	-		p5482_13	0.89	-1.7
13,411	-		p5482_13	0.89	+0.7
13,413	-		p5482_13	0.89	-2.4
13,413	-		p5482_13	0.89	-3.0
13,413	-		p5482_13	0.89	-0.5
13,507	+				-0.7
13,507	+				-2.6
13,508	-				-1.2
13,508	-				-2.2
13,508	-				-3.2
13,514	-				-0.5
13,514	-				+1.0
13,522	+				-0.9
13,523	-				-0.5
13,523	-				+0.6
13,523	-				-1.5
13,523	-				+0.7
13,524	+				-0.9
13,525	-				-2.2
13,529	-				+1.5
13,541	-				+1.2
13,541	-				-2.5