Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_819

Experiment: nitrogen source nitrate 20mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_818 and Pf1N1B4_819 are separated by 349 nucleotidesPf1N1B4_819 and Pf1N1B4_820 are separated by 331 nucleotides Pf1N1B4_818 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 934,867 to 936,255 _818 Pf1N1B4_819 - Benzoate transport protein, at 936,605 to 937,810 _819 Pf1N1B4_820 - Glucose-selective porin OprB, at 938,142 to 939,479 _820 Position (kb) 936 937 938Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 935.850 kb on - strand, within Pf1N1B4_818at 935.913 kb on - strand, within Pf1N1B4_818at 935.931 kb on - strand, within Pf1N1B4_818at 935.931 kb on - strand, within Pf1N1B4_818at 935.931 kb on - strand, within Pf1N1B4_818at 935.931 kb on - strand, within Pf1N1B4_818at 935.931 kb on - strand, within Pf1N1B4_818at 935.957 kb on - strand, within Pf1N1B4_818at 935.992 kb on - strand, within Pf1N1B4_818at 935.992 kb on - strand, within Pf1N1B4_818at 936.028 kb on + strand, within Pf1N1B4_818at 936.028 kb on + strand, within Pf1N1B4_818at 936.028 kb on + strand, within Pf1N1B4_818at 936.029 kb on - strand, within Pf1N1B4_818at 936.029 kb on - strand, within Pf1N1B4_818at 936.029 kb on - strand, within Pf1N1B4_818at 936.029 kb on - strand, within Pf1N1B4_818at 936.029 kb on - strand, within Pf1N1B4_818at 936.032 kb on + strand, within Pf1N1B4_818at 936.032 kb on + strand, within Pf1N1B4_818at 936.032 kb on + strand, within Pf1N1B4_818at 936.032 kb on + strand, within Pf1N1B4_818at 936.032 kb on + strand, within Pf1N1B4_818at 936.032 kb on + strand, within Pf1N1B4_818at 936.032 kb on + strand, within Pf1N1B4_818at 936.033 kb on - strand, within Pf1N1B4_818at 936.033 kb on - strand, within Pf1N1B4_818at 936.033 kb on - strand, within Pf1N1B4_818at 936.033 kb on - strand, within Pf1N1B4_818at 936.033 kb on - strand, within Pf1N1B4_818at 936.033 kb on - strand, within Pf1N1B4_818at 936.033 kb on - strand, within Pf1N1B4_818at 936.033 kb on - strand, within Pf1N1B4_818at 936.033 kb on - strand, within Pf1N1B4_818at 936.033 kb on - strand, within Pf1N1B4_818at 936.033 kb on - strand, within Pf1N1B4_818at 936.033 kb on - strand, within Pf1N1B4_818at 936.033 kb on - strand, within Pf1N1B4_818at 936.085 kb on - strand, within Pf1N1B4_818at 936.087 kb on - strandat 936.087 kb on - strand, within Pf1N1B4_818at 936.215 kb on + strandat 936.215 kb on + strandat 936.215 kb on + strandat 936.215 kb on + strandat 936.215 kb on + strandat 936.215 kb on + strandat 936.215 kb on + strandat 936.216 kb on - strandat 936.216 kb on - strandat 936.216 kb on - strandat 936.216 kb on - strandat 936.216 kb on - strandat 936.216 kb on - strandat 936.216 kb on - strandat 936.239 kb on - strandat 936.298 kb on + strandat 936.320 kb on + strandat 936.324 kb on - strandat 936.484 kb on - strandat 936.627 kb on + strandat 936.627 kb on + strandat 936.627 kb on + strandat 936.627 kb on + strandat 936.628 kb on - strandat 936.674 kb on + strandat 936.674 kb on + strandat 936.821 kb on - strand, within Pf1N1B4_819at 936.899 kb on + strand, within Pf1N1B4_819at 936.899 kb on + strand, within Pf1N1B4_819at 936.899 kb on + strand, within Pf1N1B4_819at 936.899 kb on + strand, within Pf1N1B4_819at 936.900 kb on - strand, within Pf1N1B4_819at 936.900 kb on - strandat 936.900 kb on - strand, within Pf1N1B4_819at 936.915 kb on + strand, within Pf1N1B4_819at 936.920 kb on - strand, within Pf1N1B4_819at 937.245 kb on + strand, within Pf1N1B4_819at 937.249 kb on + strand, within Pf1N1B4_819at 937.290 kb on - strand, within Pf1N1B4_819at 937.290 kb on - strand, within Pf1N1B4_819at 937.290 kb on - strand, within Pf1N1B4_819at 937.326 kb on - strandat 937.372 kb on + strand, within Pf1N1B4_819at 937.372 kb on + strand, within Pf1N1B4_819at 937.372 kb on + strand, within Pf1N1B4_819at 937.372 kb on + strand, within Pf1N1B4_819at 937.373 kb on - strand, within Pf1N1B4_819at 937.373 kb on - strand, within Pf1N1B4_819at 937.472 kb on + strand, within Pf1N1B4_819at 937.472 kb on + strand, within Pf1N1B4_819at 937.472 kb on + strand, within Pf1N1B4_819at 937.472 kb on + strand, within Pf1N1B4_819at 937.472 kb on + strand, within Pf1N1B4_819at 937.502 kb on + strand, within Pf1N1B4_819at 937.502 kb on + strand, within Pf1N1B4_819at 937.502 kb on + strand, within Pf1N1B4_819at 937.502 kb on + strand, within Pf1N1B4_819at 937.502 kb on + strand, within Pf1N1B4_819at 937.502 kb on + strand, within Pf1N1B4_819at 937.502 kb on + strand, within Pf1N1B4_819at 937.502 kb on + strand, within Pf1N1B4_819at 937.502 kb on + strand, within Pf1N1B4_819at 937.503 kb on - strand, within Pf1N1B4_819at 937.503 kb on - strand, within Pf1N1B4_819at 937.503 kb on - strand, within Pf1N1B4_819at 937.503 kb on - strand, within Pf1N1B4_819at 937.503 kb on - strand, within Pf1N1B4_819at 937.503 kb on - strand, within Pf1N1B4_819at 937.760 kb on + strandat 937.760 kb on + strandat 937.760 kb on + strandat 937.760 kb on + strandat 937.760 kb on + strandat 937.760 kb on + strandat 937.760 kb on + strandat 937.760 kb on + strandat 937.760 kb on + strandat 937.761 kb on - strandat 937.761 kb on - strandat 937.761 kb on - strandat 937.761 kb on - strandat 937.837 kb on + strandat 937.837 kb on + strandat 937.838 kb on - strandat 937.838 kb on - strandat 937.865 kb on + strandat 937.865 kb on + strandat 937.865 kb on + strandat 937.866 kb on - strandat 937.866 kb on - strandat 937.968 kb on - strandat 937.968 kb on - strandat 937.968 kb on - strandat 937.999 kb on + strandat 938.096 kb on + strandat 938.096 kb on + strandat 938.310 kb on + strand, within Pf1N1B4_820at 938.311 kb on - strand, within Pf1N1B4_820at 938.335 kb on + strand, within Pf1N1B4_820at 938.335 kb on + strand, within Pf1N1B4_820at 938.335 kb on + strand, within Pf1N1B4_820at 938.335 kb on + strandat 938.336 kb on - strandat 938.336 kb on - strand, within Pf1N1B4_820at 938.336 kb on - strand, within Pf1N1B4_820at 938.574 kb on + strand, within Pf1N1B4_820at 938.575 kb on - strand, within Pf1N1B4_820at 938.575 kb on - strand, within Pf1N1B4_820at 938.718 kb on + strand, within Pf1N1B4_820at 938.718 kb on + strand, within Pf1N1B4_820at 938.719 kb on - strand, within Pf1N1B4_820at 938.757 kb on + strand, within Pf1N1B4_820at 938.757 kb on + strand, within Pf1N1B4_820at 938.757 kb on + strand, within Pf1N1B4_820at 938.757 kb on + strand, within Pf1N1B4_820at 938.758 kb on - strand, within Pf1N1B4_820at 938.758 kb on - strand, within Pf1N1B4_820at 938.758 kb on - strand, within Pf1N1B4_820at 938.797 kb on - strand, within Pf1N1B4_820

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrate 20mM
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935,850 - Pf1N1B4_818 0.71 -0.4
935,913 - Pf1N1B4_818 0.75 -2.4
935,931 - Pf1N1B4_818 0.77 -0.7
935,931 - Pf1N1B4_818 0.77 +0.3
935,931 - Pf1N1B4_818 0.77 +0.7
935,931 - Pf1N1B4_818 0.77 +1.5
935,931 - Pf1N1B4_818 0.77 -0.2
935,957 - Pf1N1B4_818 0.78 +0.3
935,992 - Pf1N1B4_818 0.81 -2.6
935,992 - Pf1N1B4_818 0.81 +0.3
936,028 + Pf1N1B4_818 0.84 +0.2
936,028 + Pf1N1B4_818 0.84 +0.3
936,028 + Pf1N1B4_818 0.84 -0.8
936,029 - Pf1N1B4_818 0.84 -0.1
936,029 - Pf1N1B4_818 0.84 +1.2
936,029 - Pf1N1B4_818 0.84 -1.5
936,029 - Pf1N1B4_818 0.84 -2.0
936,029 - Pf1N1B4_818 0.84 -2.3
936,032 + Pf1N1B4_818 0.84 -1.8
936,032 + Pf1N1B4_818 0.84 +0.4
936,032 + Pf1N1B4_818 0.84 +1.4
936,032 + Pf1N1B4_818 0.84 -2.2
936,032 + Pf1N1B4_818 0.84 -0.5
936,032 + Pf1N1B4_818 0.84 -1.1
936,032 + Pf1N1B4_818 0.84 -2.2
936,033 - Pf1N1B4_818 0.84 +0.2
936,033 - Pf1N1B4_818 0.84 +1.0
936,033 - Pf1N1B4_818 0.84 -0.4
936,033 - Pf1N1B4_818 0.84 +0.5
936,033 - Pf1N1B4_818 0.84 +0.8
936,033 - Pf1N1B4_818 0.84 -1.4
936,033 - Pf1N1B4_818 0.84 -0.7
936,033 - Pf1N1B4_818 0.84 -0.7
936,033 - Pf1N1B4_818 0.84 +1.0
936,033 - Pf1N1B4_818 0.84 +0.4
936,033 - Pf1N1B4_818 0.84 -1.1
936,033 - Pf1N1B4_818 0.84 -1.6
936,033 - Pf1N1B4_818 0.84 +1.6
936,085 - Pf1N1B4_818 0.88 +0.7
936,087 - +1.8
936,087 - Pf1N1B4_818 0.88 +0.3
936,215 + -0.7
936,215 + +1.1
936,215 + +0.1
936,215 + +0.2
936,215 + -0.4
936,215 + -1.2
936,215 + -0.8
936,216 - -1.2
936,216 - +0.1
936,216 - -0.1
936,216 - -1.1
936,216 - -1.7
936,216 - +0.3
936,216 - -2.9
936,239 - +0.6
936,298 + -1.2
936,320 + -1.9
936,324 - +2.3
936,484 - -0.6
936,627 + +0.5
936,627 + +0.0
936,627 + -2.8
936,627 + +0.8
936,628 - -3.7
936,674 + +0.1
936,674 + +0.4
936,821 - Pf1N1B4_819 0.18 +0.8
936,899 + Pf1N1B4_819 0.24 +3.0
936,899 + Pf1N1B4_819 0.24 -0.9
936,899 + Pf1N1B4_819 0.24 +0.3
936,899 + Pf1N1B4_819 0.24 -0.5
936,900 - Pf1N1B4_819 0.24 +0.5
936,900 - +1.3
936,900 - Pf1N1B4_819 0.24 -2.2
936,915 + Pf1N1B4_819 0.26 +1.7
936,920 - Pf1N1B4_819 0.26 -0.2
937,245 + Pf1N1B4_819 0.53 +0.1
937,249 + Pf1N1B4_819 0.53 +0.6
937,290 - Pf1N1B4_819 0.57 -0.1
937,290 - Pf1N1B4_819 0.57 -1.5
937,290 - Pf1N1B4_819 0.57 -0.1
937,326 - -1.1
937,372 + Pf1N1B4_819 0.64 -0.4
937,372 + Pf1N1B4_819 0.64 -0.8
937,372 + Pf1N1B4_819 0.64 -0.9
937,372 + Pf1N1B4_819 0.64 -0.5
937,373 - Pf1N1B4_819 0.64 -2.4
937,373 - Pf1N1B4_819 0.64 -1.0
937,472 + Pf1N1B4_819 0.72 -0.2
937,472 + Pf1N1B4_819 0.72 -0.7
937,472 + Pf1N1B4_819 0.72 -2.7
937,472 + Pf1N1B4_819 0.72 -0.3
937,472 + Pf1N1B4_819 0.72 +1.0
937,502 + Pf1N1B4_819 0.74 -0.6
937,502 + Pf1N1B4_819 0.74 -0.4
937,502 + Pf1N1B4_819 0.74 -0.2
937,502 + Pf1N1B4_819 0.74 -0.7
937,502 + Pf1N1B4_819 0.74 +0.8
937,502 + Pf1N1B4_819 0.74 +2.1
937,502 + Pf1N1B4_819 0.74 -1.0
937,502 + Pf1N1B4_819 0.74 +0.6
937,502 + Pf1N1B4_819 0.74 -1.8
937,503 - Pf1N1B4_819 0.74 +2.6
937,503 - Pf1N1B4_819 0.74 -1.4
937,503 - Pf1N1B4_819 0.74 +0.0
937,503 - Pf1N1B4_819 0.74 +1.4
937,503 - Pf1N1B4_819 0.74 -1.1
937,503 - Pf1N1B4_819 0.74 -1.2
937,760 + +0.9
937,760 + +2.3
937,760 + +0.6
937,760 + -1.0
937,760 + +0.9
937,760 + -1.2
937,760 + -1.4
937,760 + -0.3
937,760 + -0.5
937,761 - -1.2
937,761 - -3.8
937,761 - +0.3
937,761 - -1.4
937,837 + +1.5
937,837 + +0.5
937,838 - -0.7
937,838 - -0.8
937,865 + +1.6
937,865 + +0.8
937,865 + -0.0
937,866 - -0.7
937,866 - +0.4
937,968 - -2.4
937,968 - -3.6
937,968 - -0.9
937,999 + +0.8
938,096 + +2.5
938,096 + +0.4
938,310 + Pf1N1B4_820 0.13 -0.3
938,311 - Pf1N1B4_820 0.13 +0.0
938,335 + Pf1N1B4_820 0.14 -0.2
938,335 + Pf1N1B4_820 0.14 -1.6
938,335 + Pf1N1B4_820 0.14 -0.5
938,335 + -1.1
938,336 - -0.2
938,336 - Pf1N1B4_820 0.14 -2.1
938,336 - Pf1N1B4_820 0.14 -0.8
938,574 + Pf1N1B4_820 0.32 -0.1
938,575 - Pf1N1B4_820 0.32 -1.8
938,575 - Pf1N1B4_820 0.32 -2.8
938,718 + Pf1N1B4_820 0.43 +1.3
938,718 + Pf1N1B4_820 0.43 -1.6
938,719 - Pf1N1B4_820 0.43 -0.9
938,757 + Pf1N1B4_820 0.46 -0.1
938,757 + Pf1N1B4_820 0.46 -2.0
938,757 + Pf1N1B4_820 0.46 +1.9
938,757 + Pf1N1B4_820 0.46 -0.8
938,758 - Pf1N1B4_820 0.46 -1.2
938,758 - Pf1N1B4_820 0.46 -2.0
938,758 - Pf1N1B4_820 0.46 -2.5
938,797 - Pf1N1B4_820 0.49 -2.3

Or see this region's nucleotide sequence