Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004767 and ABIE53_004768 are separated by 30 nucleotides ABIE53_004768 and ABIE53_004769 are separated by 85 nucleotides ABIE53_004769 and ABIE53_004770 are separated by 72 nucleotides
ABIE53_004767: ABIE53_004767 - succinate dehydrogenase / fumarate reductase flavoprotein subunit, at 971,196 to 972,971
_004767
ABIE53_004768: ABIE53_004768 - succinate dehydrogenase / fumarate reductase iron-sulfur subunit, at 973,002 to 973,706
_004768
ABIE53_004769: ABIE53_004769 - antitoxin CptB, at 973,792 to 974,064
_004769
ABIE53_004770: ABIE53_004770 - citrate synthase, at 974,137 to 975,438
_004770
Position (kb) 973
974
975 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 973.697 kb on + strand at 973.704 kb on + strand at 973.704 kb on + strand at 973.704 kb on + strand at 973.718 kb on + strand at 973.785 kb on + strand at 973.785 kb on + strand at 974.112 kb on + strand at 974.112 kb on + strand at 974.116 kb on + strand at 974.116 kb on + strand at 974.116 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 973,697 + -0.6 973,704 + -1.1 973,704 + +1.7 973,704 + -0.7 973,718 + +0.9 973,785 + +1.6 973,785 + +3.1 974,112 + -2.3 974,112 + -1.1 974,116 + +1.8 974,116 + -0.2 974,116 + -0.5
Or see this region's nucleotide sequence