Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004630 and ABIE53_004631 are separated by 182 nucleotides ABIE53_004631 and ABIE53_004632 are separated by 184 nucleotides ABIE53_004632 and ABIE53_004633 are separated by 110 nucleotides ABIE53_004633 and ABIE53_004634 are separated by 49 nucleotides
ABIE53_004630: ABIE53_004630 - hypothetical protein, at 814,053 to 814,313
_004630
ABIE53_004631: ABIE53_004631 - cytoskeletal protein RodZ, at 814,496 to 814,888
_004631
ABIE53_004632: ABIE53_004632 - CRP/FNR family cyclic AMP-dependent transcriptional regulator, at 815,073 to 815,786
_004632
ABIE53_004633: ABIE53_004633 - putative membrane protein YGL010W, at 815,897 to 816,436
_004633
ABIE53_004634: ABIE53_004634 - chloramphenicol-sensitive protein RarD, at 816,486 to 817,376
_004634
Position (kb) 815
816 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 814.139 kb on - strand, within ABIE53_004630 at 814.299 kb on - strand at 814.318 kb on + strand at 814.318 kb on + strand at 814.318 kb on + strand at 814.318 kb on + strand at 814.318 kb on + strand at 814.319 kb on - strand at 814.330 kb on + strand at 814.330 kb on + strand at 814.331 kb on - strand at 814.331 kb on - strand at 814.331 kb on - strand at 814.344 kb on + strand at 814.345 kb on - strand at 814.345 kb on - strand at 814.345 kb on - strand at 814.345 kb on - strand at 814.417 kb on + strand at 814.756 kb on + strand, within ABIE53_004631 at 814.756 kb on + strand, within ABIE53_004631 at 814.756 kb on + strand, within ABIE53_004631 at 814.756 kb on + strand, within ABIE53_004631 at 814.756 kb on + strand, within ABIE53_004631 at 814.756 kb on + strand, within ABIE53_004631 at 814.757 kb on - strand, within ABIE53_004631 at 814.757 kb on - strand, within ABIE53_004631 at 814.757 kb on - strand, within ABIE53_004631 at 814.886 kb on + strand at 814.887 kb on - strand at 814.887 kb on - strand at 814.895 kb on + strand at 814.895 kb on + strand at 814.926 kb on + strand at 814.926 kb on + strand at 814.926 kb on + strand at 814.927 kb on - strand at 814.927 kb on - strand at 814.927 kb on - strand at 814.927 kb on - strand at 814.929 kb on + strand at 814.930 kb on - strand at 814.930 kb on - strand at 814.936 kb on + strand at 814.945 kb on - strand at 814.987 kb on + strand at 814.987 kb on + strand at 814.987 kb on + strand at 814.988 kb on - strand at 815.048 kb on + strand at 815.049 kb on - strand at 815.075 kb on - strand at 815.134 kb on - strand at 815.134 kb on - strand at 815.134 kb on - strand at 815.262 kb on - strand, within ABIE53_004632 at 815.278 kb on + strand, within ABIE53_004632 at 815.279 kb on - strand, within ABIE53_004632 at 815.346 kb on + strand, within ABIE53_004632 at 815.346 kb on + strand, within ABIE53_004632 at 815.346 kb on + strand, within ABIE53_004632 at 815.346 kb on + strand, within ABIE53_004632 at 815.347 kb on - strand, within ABIE53_004632 at 815.347 kb on - strand, within ABIE53_004632 at 815.404 kb on + strand, within ABIE53_004632 at 815.479 kb on + strand, within ABIE53_004632 at 815.480 kb on - strand, within ABIE53_004632 at 815.480 kb on - strand, within ABIE53_004632 at 815.607 kb on + strand, within ABIE53_004632 at 815.607 kb on + strand, within ABIE53_004632 at 815.608 kb on - strand, within ABIE53_004632 at 815.608 kb on - strand, within ABIE53_004632 at 815.617 kb on + strand, within ABIE53_004632 at 815.617 kb on + strand, within ABIE53_004632 at 815.618 kb on - strand, within ABIE53_004632 at 815.618 kb on - strand, within ABIE53_004632 at 815.618 kb on - strand, within ABIE53_004632 at 815.792 kb on - strand at 815.920 kb on + strand at 815.920 kb on + strand at 815.920 kb on + strand at 815.928 kb on - strand at 815.928 kb on - strand at 815.936 kb on + strand at 815.936 kb on + strand at 815.936 kb on + strand at 815.936 kb on + strand at 815.937 kb on - strand at 815.937 kb on - strand at 815.937 kb on - strand at 816.092 kb on + strand, within ABIE53_004633 at 816.092 kb on + strand, within ABIE53_004633 at 816.092 kb on + strand, within ABIE53_004633 at 816.092 kb on + strand, within ABIE53_004633 at 816.092 kb on + strand, within ABIE53_004633 at 816.093 kb on - strand, within ABIE53_004633 at 816.095 kb on + strand, within ABIE53_004633 at 816.095 kb on + strand, within ABIE53_004633 at 816.095 kb on + strand, within ABIE53_004633 at 816.095 kb on + strand, within ABIE53_004633 at 816.095 kb on + strand, within ABIE53_004633 at 816.095 kb on + strand, within ABIE53_004633 at 816.095 kb on + strand, within ABIE53_004633 at 816.096 kb on - strand, within ABIE53_004633 at 816.096 kb on - strand, within ABIE53_004633 at 816.096 kb on - strand, within ABIE53_004633 at 816.096 kb on - strand, within ABIE53_004633 at 816.096 kb on - strand, within ABIE53_004633 at 816.096 kb on - strand, within ABIE53_004633 at 816.096 kb on - strand, within ABIE53_004633 at 816.245 kb on - strand, within ABIE53_004633 at 816.245 kb on - strand, within ABIE53_004633 at 816.260 kb on + strand, within ABIE53_004633 at 816.284 kb on - strand, within ABIE53_004633 at 816.294 kb on + strand, within ABIE53_004633 at 816.294 kb on + strand, within ABIE53_004633 at 816.294 kb on + strand, within ABIE53_004633 at 816.294 kb on + strand, within ABIE53_004633 at 816.294 kb on + strand, within ABIE53_004633 at 816.295 kb on - strand, within ABIE53_004633 at 816.295 kb on - strand, within ABIE53_004633 at 816.295 kb on - strand, within ABIE53_004633 at 816.295 kb on - strand, within ABIE53_004633 at 816.295 kb on - strand, within ABIE53_004633 at 816.295 kb on - strand, within ABIE53_004633 at 816.379 kb on - strand, within ABIE53_004633 at 816.379 kb on - strand, within ABIE53_004633 at 816.379 kb on - strand, within ABIE53_004633 at 816.479 kb on + strand at 816.479 kb on + strand at 816.480 kb on - strand at 816.480 kb on - strand at 816.512 kb on + strand at 816.512 kb on + strand at 816.512 kb on + strand at 816.512 kb on + strand at 816.512 kb on + strand at 816.512 kb on + strand at 816.512 kb on + strand at 816.513 kb on - strand at 816.513 kb on - strand at 816.513 kb on - strand at 816.513 kb on - strand at 816.513 kb on - strand at 816.513 kb on - strand at 816.513 kb on - strand at 816.513 kb on - strand at 816.513 kb on - strand at 816.544 kb on - strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.553 kb on + strand at 816.554 kb on - strand at 816.554 kb on - strand at 816.554 kb on - strand at 816.554 kb on - strand at 816.554 kb on - strand at 816.554 kb on - strand at 816.554 kb on - strand at 816.554 kb on - strand at 816.554 kb on - strand at 816.554 kb on - strand at 816.554 kb on - strand at 816.554 kb on - strand at 816.554 kb on - strand at 816.554 kb on - strand at 816.554 kb on - strand at 816.554 kb on - strand at 816.631 kb on + strand, within ABIE53_004634 at 816.632 kb on - strand, within ABIE53_004634 at 816.682 kb on + strand, within ABIE53_004634 at 816.682 kb on + strand, within ABIE53_004634 at 816.682 kb on + strand, within ABIE53_004634 at 816.682 kb on + strand, within ABIE53_004634 at 816.683 kb on - strand, within ABIE53_004634 at 816.683 kb on - strand, within ABIE53_004634 at 816.683 kb on - strand, within ABIE53_004634 at 816.758 kb on + strand, within ABIE53_004634 at 816.758 kb on + strand, within ABIE53_004634 at 816.758 kb on + strand, within ABIE53_004634 at 816.759 kb on - strand, within ABIE53_004634
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 814,139 - ABIE53_004630 0.33 -0.4 814,299 - -0.7 814,318 + -1.1 814,318 + -1.8 814,318 + -1.6 814,318 + +1.5 814,318 + +0.5 814,319 - -1.1 814,330 + -0.5 814,330 + -1.4 814,331 - -0.7 814,331 - +1.8 814,331 - -1.9 814,344 + +0.9 814,345 - -1.4 814,345 - -1.2 814,345 - +0.1 814,345 - -1.3 814,417 + -0.5 814,756 + ABIE53_004631 0.66 -0.3 814,756 + ABIE53_004631 0.66 -2.4 814,756 + ABIE53_004631 0.66 -3.5 814,756 + ABIE53_004631 0.66 -1.3 814,756 + ABIE53_004631 0.66 +2.1 814,756 + ABIE53_004631 0.66 -0.7 814,757 - ABIE53_004631 0.66 +2.1 814,757 - ABIE53_004631 0.66 -2.6 814,757 - ABIE53_004631 0.66 -1.0 814,886 + -2.1 814,887 - +3.1 814,887 - -1.2 814,895 + +1.1 814,895 + -1.2 814,926 + +0.3 814,926 + +0.8 814,926 + -1.0 814,927 - +0.3 814,927 - +1.4 814,927 - +0.1 814,927 - +1.2 814,929 + -1.0 814,930 - -2.4 814,930 - -0.3 814,936 + -0.1 814,945 - -0.9 814,987 + -2.8 814,987 + +0.2 814,987 + -2.4 814,988 - -0.5 815,048 + +0.2 815,049 - -1.0 815,075 - +0.7 815,134 - -0.1 815,134 - -0.9 815,134 - -0.4 815,262 - ABIE53_004632 0.26 +0.1 815,278 + ABIE53_004632 0.29 -0.2 815,279 - ABIE53_004632 0.29 +1.1 815,346 + ABIE53_004632 0.38 -1.8 815,346 + ABIE53_004632 0.38 +1.1 815,346 + ABIE53_004632 0.38 +0.6 815,346 + ABIE53_004632 0.38 -2.2 815,347 - ABIE53_004632 0.38 +0.1 815,347 - ABIE53_004632 0.38 +0.8 815,404 + ABIE53_004632 0.46 +1.5 815,479 + ABIE53_004632 0.57 +0.5 815,480 - ABIE53_004632 0.57 -1.1 815,480 - ABIE53_004632 0.57 -1.4 815,607 + ABIE53_004632 0.75 +1.3 815,607 + ABIE53_004632 0.75 +0.1 815,608 - ABIE53_004632 0.75 -1.8 815,608 - ABIE53_004632 0.75 +1.2 815,617 + ABIE53_004632 0.76 -0.2 815,617 + ABIE53_004632 0.76 +1.2 815,618 - ABIE53_004632 0.76 +1.3 815,618 - ABIE53_004632 0.76 +0.5 815,618 - ABIE53_004632 0.76 +0.3 815,792 - +0.6 815,920 + -0.5 815,920 + +1.1 815,920 + +0.3 815,928 - +1.5 815,928 - +0.3 815,936 + -2.1 815,936 + -0.2 815,936 + -0.2 815,936 + -1.6 815,937 - -0.2 815,937 - -1.2 815,937 - +1.2 816,092 + ABIE53_004633 0.36 -0.7 816,092 + ABIE53_004633 0.36 -0.5 816,092 + ABIE53_004633 0.36 -0.7 816,092 + ABIE53_004633 0.36 -0.2 816,092 + ABIE53_004633 0.36 -2.0 816,093 - ABIE53_004633 0.36 -0.8 816,095 + ABIE53_004633 0.37 -3.3 816,095 + ABIE53_004633 0.37 -0.6 816,095 + ABIE53_004633 0.37 +0.3 816,095 + ABIE53_004633 0.37 -1.5 816,095 + ABIE53_004633 0.37 -0.7 816,095 + ABIE53_004633 0.37 -1.1 816,095 + ABIE53_004633 0.37 +1.7 816,096 - ABIE53_004633 0.37 -0.2 816,096 - ABIE53_004633 0.37 -0.6 816,096 - ABIE53_004633 0.37 +0.5 816,096 - ABIE53_004633 0.37 -1.3 816,096 - ABIE53_004633 0.37 -0.5 816,096 - ABIE53_004633 0.37 -0.2 816,096 - ABIE53_004633 0.37 -0.2 816,245 - ABIE53_004633 0.64 +1.1 816,245 - ABIE53_004633 0.64 +0.5 816,260 + ABIE53_004633 0.67 +0.8 816,284 - ABIE53_004633 0.72 -1.4 816,294 + ABIE53_004633 0.74 -0.3 816,294 + ABIE53_004633 0.74 -1.9 816,294 + ABIE53_004633 0.74 -0.9 816,294 + ABIE53_004633 0.74 -0.9 816,294 + ABIE53_004633 0.74 -1.2 816,295 - ABIE53_004633 0.74 -1.8 816,295 - ABIE53_004633 0.74 +0.4 816,295 - ABIE53_004633 0.74 +0.1 816,295 - ABIE53_004633 0.74 +0.5 816,295 - ABIE53_004633 0.74 -2.1 816,295 - ABIE53_004633 0.74 -0.5 816,379 - ABIE53_004633 0.89 +1.1 816,379 - ABIE53_004633 0.89 -0.4 816,379 - ABIE53_004633 0.89 +1.1 816,479 + +1.3 816,479 + -2.8 816,480 - -0.9 816,480 - -0.2 816,512 + +0.9 816,512 + +1.8 816,512 + +1.4 816,512 + +0.1 816,512 + -0.9 816,512 + -0.1 816,512 + -1.3 816,513 - -1.1 816,513 - -2.1 816,513 - -0.9 816,513 - -1.1 816,513 - +1.2 816,513 - -0.9 816,513 - -1.1 816,513 - -0.4 816,513 - -0.7 816,544 - -0.2 816,553 + -0.5 816,553 + +0.9 816,553 + -2.6 816,553 + +1.1 816,553 + -1.4 816,553 + -2.0 816,553 + -1.9 816,553 + -1.3 816,553 + +0.1 816,553 + +1.1 816,553 + -0.4 816,553 + -0.5 816,553 + +0.1 816,553 + -0.9 816,553 + +1.1 816,553 + -0.4 816,553 + -0.2 816,554 - +0.1 816,554 - +0.3 816,554 - -1.7 816,554 - -1.8 816,554 - -0.2 816,554 - -0.9 816,554 - -1.8 816,554 - -2.0 816,554 - +1.4 816,554 - -0.8 816,554 - -0.2 816,554 - -0.5 816,554 - -2.3 816,554 - +0.1 816,554 - -1.4 816,554 - -1.4 816,631 + ABIE53_004634 0.16 +1.0 816,632 - ABIE53_004634 0.16 +0.3 816,682 + ABIE53_004634 0.22 -2.7 816,682 + ABIE53_004634 0.22 +0.0 816,682 + ABIE53_004634 0.22 +0.1 816,682 + ABIE53_004634 0.22 -0.4 816,683 - ABIE53_004634 0.22 -0.5 816,683 - ABIE53_004634 0.22 -1.4 816,683 - ABIE53_004634 0.22 -0.7 816,758 + ABIE53_004634 0.31 -2.8 816,758 + ABIE53_004634 0.31 +0.4 816,758 + ABIE53_004634 0.31 -2.5 816,759 - ABIE53_004634 0.31 -0.7
Or see this region's nucleotide sequence