Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003359

Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
3,782,211	+				-0.5
3,782,211	+				-0.5
3,782,211	+				-1.3
3,782,211	+				-1.5
3,782,212	-				+1.5
3,782,212	-				-0.3
3,782,232	+				-2.2
3,782,232	+				+0.0
3,782,232	+				-2.4
3,782,232	+				+0.1
3,782,232	+				-1.0
3,782,233	-				+0.5
3,782,233	-				-3.4
3,782,233	-				+0.7
3,782,233	-				+0.7
3,782,314	-				-1.0
3,782,338	+				-1.0
3,782,339	-				+0.1
3,782,339	-				-0.9
3,782,339	-				-2.2
3,782,339	-				-0.6
3,782,412	-				+1.2
3,782,412	-				-0.5
3,782,412	-				+0.5
3,783,017	-				-0.6
3,783,017	-				-0.2
3,783,017	-				-0.9
3,783,017	-				-0.2
3,783,017	-				+1.1
3,783,017	-				+0.6
3,783,017	-				-1.3
3,783,017	-				-2.3
3,783,017	-				-2.0
3,783,017	-				-1.6
3,783,017	-				+1.0
3,783,019	-				-1.8
3,783,019	-				+0.3
3,783,019	-				-0.3
3,783,019	-				-2.5
3,783,019	-				-0.2
3,783,019	-				+0.6
3,783,019	-				-0.9
3,783,019	-				-0.1
3,783,019	-				-1.3
3,783,019	-				+1.3
3,783,019	-				-1.2
3,783,019	-				-1.3
3,783,019	-				+1.1
3,783,044	-				-0.9
3,783,044	-				+0.5
3,783,044	-				+1.2
3,783,044	-				-1.2
3,783,044	-				-2.8
3,783,114	-				-0.5
3,783,114	-				+0.5
3,783,114	-				+0.1
3,783,216	+		ABIE53_003359	0.12	+1.4
3,783,216	+		ABIE53_003359	0.12	+0.2
3,783,216	+		ABIE53_003359	0.12	+1.0
3,783,217	-		ABIE53_003359	0.12	+0.4
3,783,287	+		ABIE53_003359	0.24	+0.5
3,783,287	+		ABIE53_003359	0.24	-0.4
3,783,287	+		ABIE53_003359	0.24	+0.0
3,783,287	+		ABIE53_003359	0.24	+0.4
3,783,287	+		ABIE53_003359	0.24	-1.6
3,783,288	-		ABIE53_003359	0.24	-1.6
3,783,288	-		ABIE53_003359	0.24	-0.6
3,783,288	-		ABIE53_003359	0.24	-2.0
3,783,288	-		ABIE53_003359	0.24	+0.6
3,783,288	-		ABIE53_003359	0.24	+0.0
3,783,288	-		ABIE53_003359	0.24	-0.5
3,783,288	-		ABIE53_003359	0.24	-1.9
3,783,288	-		ABIE53_003359	0.24	-0.5
3,783,338	+		ABIE53_003359	0.33	-0.9
3,783,508	+		ABIE53_003359	0.64	-0.2
3,783,509	-		ABIE53_003359	0.64	-2.3
3,783,509	-		ABIE53_003359	0.64	+0.7
3,783,554	+		ABIE53_003359	0.72	+0.3
3,783,554	+		ABIE53_003359	0.72	+1.2
3,783,554	+		ABIE53_003359	0.72	+2.1
3,783,554	+		ABIE53_003359	0.72	+1.6
3,783,554	+		ABIE53_003359	0.72	-0.7
3,783,554	+		ABIE53_003359	0.72	+0.7
3,783,554	+		ABIE53_003359	0.72	+0.1
3,783,554	+		ABIE53_003359	0.72	-1.3
3,783,555	-		ABIE53_003359	0.72	+1.4
3,783,555	-		ABIE53_003359	0.72	-1.0
3,783,555	-		ABIE53_003359	0.72	-1.5
3,783,555	-		ABIE53_003359	0.72	-0.2
3,783,555	-		ABIE53_003359	0.72	-0.8
3,783,555	-		ABIE53_003359	0.72	+2.9
3,783,560	+		ABIE53_003359	0.73	-1.7
3,783,560	+		ABIE53_003359	0.73	-1.4
3,783,560	+		ABIE53_003359	0.73	-0.0
3,783,561	-		ABIE53_003359	0.73	+0.1
3,783,561	-		ABIE53_003359	0.73	+0.0
3,783,561	-		ABIE53_003359	0.73	+2.1
3,783,561	-		ABIE53_003359	0.73	-1.8
3,783,653	+		ABIE53_003359	0.89	+0.1
3,783,653	+		ABIE53_003359	0.89	+0.4
3,783,653	+		ABIE53_003359	0.89	+3.1
3,783,653	+		ABIE53_003359	0.89	+1.4
3,783,653	+		ABIE53_003359	0.89	+0.1
3,783,653	+		ABIE53_003359	0.89	+2.1
3,783,653	+		ABIE53_003359	0.89	-1.7
3,783,653	+		ABIE53_003359	0.89	-0.5
3,783,653	+		ABIE53_003359	0.89	-1.0
3,783,653	+		ABIE53_003359	0.89	-0.7
3,783,654	-		ABIE53_003359	0.90	-1.6
3,783,654	-		ABIE53_003359	0.90	+0.3
3,783,654	-		ABIE53_003359	0.90	-1.0
3,783,654	-		ABIE53_003359	0.90	-0.7
3,783,654	-		ABIE53_003359	0.90	+1.8
3,783,654	-		ABIE53_003359	0.90	+0.7
3,783,676	+				+0.9
3,783,676	+				-0.9
3,783,677	-				+3.1
3,783,771	+				+0.4
3,783,771	+				-0.2
3,783,771	+				-2.4
3,783,772	-				+0.9
3,783,772	-				+1.0
3,783,772	-				-1.7
3,783,802	+				-1.8
3,783,802	+				+1.7
3,783,802	+				+1.3
3,783,802	+				+0.7
3,783,803	-				-1.5
3,783,803	-				-0.6
3,783,803	-				+1.0
3,783,803	-				-1.4
3,783,803	-				-0.2
3,784,154	+		ABIE53_003360	0.24	-1.6
3,784,155	+		ABIE53_003360	0.24	+1.0
3,784,155	+		ABIE53_003360	0.24	-0.4
3,784,155	+		ABIE53_003360	0.24	-1.0
3,784,155	+		ABIE53_003360	0.24	-0.9
3,784,155	+		ABIE53_003360	0.24	-1.9
3,784,155	+		ABIE53_003360	0.24	+1.3
3,784,155	+		ABIE53_003360	0.24	+0.5
3,784,155	+		ABIE53_003360	0.24	-0.6
3,784,155	+		ABIE53_003360	0.24	+0.0
3,784,155	+		ABIE53_003360	0.24	-1.9
3,784,155	+		ABIE53_003360	0.24	-1.4
3,784,155	+		ABIE53_003360	0.24	-2.1
3,784,155	+		ABIE53_003360	0.24	-1.2
3,784,155	+		ABIE53_003360	0.24	+0.4
3,784,155	+		ABIE53_003360	0.24	-0.4
3,784,156	-		ABIE53_003360	0.24	-1.2
3,784,156	-		ABIE53_003360	0.24	+3.0
3,784,156	-		ABIE53_003360	0.24	+1.3
3,784,156	-		ABIE53_003360	0.24	+0.5
3,784,156	-		ABIE53_003360	0.24	-1.5
3,784,156	-		ABIE53_003360	0.24	-1.7
3,784,156	-		ABIE53_003360	0.24	+3.7
3,784,156	-		ABIE53_003360	0.24	-0.9
3,784,156	-		ABIE53_003360	0.24	-1.7
3,784,156	-		ABIE53_003360	0.24	-0.1
3,784,156	-		ABIE53_003360	0.24	-0.1
3,784,156	-		ABIE53_003360	0.24	-0.2
3,784,156	-		ABIE53_003360	0.24	+0.1
3,784,156	-		ABIE53_003360	0.24	-0.5
3,784,157	+		ABIE53_003360	0.24	-1.7
3,784,157	+		ABIE53_003360	0.24	-1.7
3,784,157	+		ABIE53_003360	0.24	-2.6
3,784,157	+		ABIE53_003360	0.24	-0.2
3,784,157	+		ABIE53_003360	0.24	-0.4
3,784,157	+		ABIE53_003360	0.24	+0.5
3,784,157	+		ABIE53_003360	0.24	-0.9
3,784,157	+		ABIE53_003360	0.24	-0.0
3,784,157	+		ABIE53_003360	0.24	+2.3
3,784,158	-		ABIE53_003360	0.24	+0.5
3,784,158	-		ABIE53_003360	0.24	-0.7
3,784,158	-		ABIE53_003360	0.24	-0.7
3,784,158	-		ABIE53_003360	0.24	-0.8
3,784,158	-		ABIE53_003360	0.24	-1.4
3,784,158	-		ABIE53_003360	0.24	-0.7
3,784,158	-		ABIE53_003360	0.24	-1.4
3,784,158	-		ABIE53_003360	0.24	+2.1
3,784,158	-		ABIE53_003360	0.24	-0.7
3,784,158	-		ABIE53_003360	0.24	-1.1
3,784,158	-		ABIE53_003360	0.24	+0.7
3,784,158	-		ABIE53_003360	0.24	-1.4
3,784,158	-		ABIE53_003360	0.24	+1.5
3,784,158	-		ABIE53_003360	0.24	+0.4
3,784,251	+		ABIE53_003360	0.30	-0.9
3,784,251	+		ABIE53_003360	0.30	+1.1
3,784,251	+		ABIE53_003360	0.30	-0.5
3,784,251	+		ABIE53_003360	0.30	-0.6
3,784,251	+		ABIE53_003360	0.30	-1.2
3,784,251	+		ABIE53_003360	0.30	+0.1
3,784,252	-		ABIE53_003360	0.30	-0.7
3,784,252	-		ABIE53_003360	0.30	+0.8
3,784,252	-		ABIE53_003360	0.30	-0.9
3,784,252	-		ABIE53_003360	0.30	-0.8
3,784,252	-		ABIE53_003360	0.30	+3.1
3,784,252	-		ABIE53_003360	0.30	+1.2
3,784,291	+		ABIE53_003360	0.32	-0.5
3,784,329	+		ABIE53_003360	0.35	-0.7
3,784,330	-		ABIE53_003360	0.35	-0.2
3,784,330	-		ABIE53_003360	0.35	-0.7
3,784,330	-		ABIE53_003360	0.35	-0.2
3,784,330	-		ABIE53_003360	0.35	+0.1
3,784,330	-		ABIE53_003360	0.35	-0.3
3,784,330	-		ABIE53_003360	0.35	-0.2
3,784,391	+		ABIE53_003360	0.39	-0.2
3,784,443	+		ABIE53_003360	0.42	-0.5
3,784,443	+		ABIE53_003360	0.42	+0.7
3,784,443	+		ABIE53_003360	0.42	+0.6
3,784,444	-		ABIE53_003360	0.42	-0.7
3,784,444	-		ABIE53_003360	0.42	-0.9
3,784,470	+		ABIE53_003360	0.44	-1.2
3,784,470	+		ABIE53_003360	0.44	+0.3
3,784,470	+		ABIE53_003360	0.44	-0.2
3,784,470	+		ABIE53_003360	0.44	+0.1
3,784,470	+		ABIE53_003360	0.44	+0.9
3,784,470	+		ABIE53_003360	0.44	+2.1
3,784,470	+		ABIE53_003360	0.44	-1.3
3,784,471	-		ABIE53_003360	0.44	-1.1
3,784,471	-		ABIE53_003360	0.44	+0.1
3,784,471	-		ABIE53_003360	0.44	-0.9
3,784,677	+		ABIE53_003360	0.57	+1.3
3,784,677	+		ABIE53_003360	0.57	-2.3
3,784,678	-		ABIE53_003360	0.57	+0.5