Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002317

Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
2,599,604	+		ABIE53_002316	0.47	-0.7
2,599,604	+		ABIE53_002316	0.47	-3.0
2,599,604	+		ABIE53_002316	0.47	-1.5
2,599,604	+		ABIE53_002316	0.47	-4.1
2,599,604	+		ABIE53_002316	0.47	-0.2
2,599,604	+		ABIE53_002316	0.47	-3.1
2,599,605	-		ABIE53_002316	0.47	-0.2
2,599,665	+		ABIE53_002316	0.50	-2.4
2,599,665	+		ABIE53_002316	0.50	-4.1
2,599,666	-		ABIE53_002316	0.51	-1.5
2,599,666	-		ABIE53_002316	0.51	-1.0
2,599,666	-		ABIE53_002316	0.51	-3.9
2,599,666	-		ABIE53_002316	0.51	-1.2
2,599,690	+		ABIE53_002316	0.52	-0.2
2,599,690	+		ABIE53_002316	0.52	-1.5
2,599,691	-		ABIE53_002316	0.52	-0.5
2,599,715	+		ABIE53_002316	0.53	-3.2
2,599,716	-		ABIE53_002316	0.53	-2.8
2,599,716	-		ABIE53_002316	0.53	-2.3
2,599,716	-		ABIE53_002316	0.53	+0.2
2,599,778	+		ABIE53_002316	0.57	-1.2
2,599,778	+		ABIE53_002316	0.57	-1.6
2,599,778	+		ABIE53_002316	0.57	+0.4
2,599,779	-		ABIE53_002316	0.57	-0.8
2,599,779	-		ABIE53_002316	0.57	-2.3
2,599,779	-		ABIE53_002316	0.57	-0.2
2,599,793	+		ABIE53_002316	0.58	-1.0
2,599,793	+		ABIE53_002316	0.58	-2.7
2,599,793	+		ABIE53_002316	0.58	-0.5
2,599,793	+		ABIE53_002316	0.58	-2.2
2,599,871	+		ABIE53_002316	0.62	+0.8
2,599,872	-		ABIE53_002316	0.63	-2.5
2,599,872	-		ABIE53_002316	0.63	-4.9
2,599,872	-		ABIE53_002316	0.63	-1.5
2,599,884	-		ABIE53_002316	0.63	-3.0
2,599,893	-		ABIE53_002316	0.64	-3.9
2,599,934	+		ABIE53_002316	0.66	-2.0
2,599,934	+		ABIE53_002316	0.66	-2.6
2,599,934	+		ABIE53_002316	0.66	-1.0
2,599,934	+		ABIE53_002316	0.66	-0.2
2,599,934	+		ABIE53_002316	0.66	-0.8
2,599,935	-		ABIE53_002316	0.66	+1.1
2,599,935	-		ABIE53_002316	0.66	-1.0
2,599,935	-		ABIE53_002316	0.66	-0.5
2,599,935	-		ABIE53_002316	0.66	-1.8
2,599,935	-		ABIE53_002316	0.66	+0.8
2,599,935	-		ABIE53_002316	0.66	-1.9
2,599,964	+		ABIE53_002316	0.68	+2.8
2,600,021	+		ABIE53_002316	0.71	-4.9
2,600,022	-		ABIE53_002316	0.71	-1.0
2,600,057	+		ABIE53_002316	0.73	-2.6
2,600,084	+		ABIE53_002316	0.75	-1.8
2,600,159	+		ABIE53_002316	0.79	-3.4
2,600,160	-		ABIE53_002316	0.79	-1.5
2,600,222	+		ABIE53_002316	0.83	-3.4
2,600,222	+		ABIE53_002316	0.83	-2.5
2,600,222	+		ABIE53_002316	0.83	-3.8
2,600,223	-		ABIE53_002316	0.83	-1.5
2,600,245	-		ABIE53_002316	0.84	+1.2
2,600,245	-		ABIE53_002316	0.84	-1.2
2,600,255	+		ABIE53_002316	0.85	-3.6
2,600,255	+		ABIE53_002316	0.85	-3.9
2,600,256	-		ABIE53_002316	0.85	-2.5
2,600,256	-		ABIE53_002316	0.85	-4.1
2,600,256	-		ABIE53_002316	0.85	-4.4
2,600,256	-		ABIE53_002316	0.85	-4.1
2,600,256	-		ABIE53_002316	0.85	-3.1
2,600,557	+				+0.1
2,600,558	-				-2.9
2,600,558	-				-5.3
2,600,558	-				-1.9
2,600,594	+				-2.4
2,600,594	+				-1.8
2,600,624	-				+0.8
2,600,663	+		ABIE53_002317	0.12	-3.8
2,600,663	+		ABIE53_002317	0.12	-4.3
2,600,664	-		ABIE53_002317	0.12	+0.8
2,600,664	-		ABIE53_002317	0.12	-2.0
2,600,666	-		ABIE53_002317	0.12	+0.8
2,600,666	-		ABIE53_002317	0.12	-0.9
2,600,666	-		ABIE53_002317	0.12	-3.8
2,600,675	-		ABIE53_002317	0.13	-4.5
2,600,707	-		ABIE53_002317	0.15	-0.5
2,600,707	-		ABIE53_002317	0.15	-2.8
2,600,707	-		ABIE53_002317	0.15	-3.3
2,600,768	-		ABIE53_002317	0.20	-1.4
2,600,768	-		ABIE53_002317	0.20	+0.5
2,600,836	-		ABIE53_002317	0.26	-4.2
2,600,935	+		ABIE53_002317	0.33	-3.7
2,600,936	-		ABIE53_002317	0.33	-3.6
2,600,936	-		ABIE53_002317	0.33	-3.6
2,600,956	+		ABIE53_002317	0.35	-1.9
2,600,956	+		ABIE53_002317	0.35	-2.5
2,600,956	+		ABIE53_002317	0.35	-2.1
2,600,956	+		ABIE53_002317	0.35	-3.6
2,600,956	+		ABIE53_002317	0.35	-0.9
2,600,956	+		ABIE53_002317	0.35	-0.5
2,600,957	-		ABIE53_002317	0.35	-2.0
2,600,957	-		ABIE53_002317	0.35	-0.8
2,600,957	-		ABIE53_002317	0.35	-1.4
2,601,079	+		ABIE53_002317	0.45	-4.6
2,601,080	-		ABIE53_002317	0.45	-1.5
2,601,407	-		ABIE53_002317	0.70	-2.8
2,601,407	-		ABIE53_002317	0.70	-2.2
2,601,407	-		ABIE53_002317	0.70	-0.2
2,601,535	+		ABIE53_002317	0.81	-0.4
2,601,535	+		ABIE53_002317	0.81	+0.2
2,601,535	+		ABIE53_002317	0.81	-3.5
2,601,535	+		ABIE53_002317	0.81	-4.4
2,601,536	-		ABIE53_002317	0.81	-1.0
2,601,536	-		ABIE53_002317	0.81	-5.1
2,601,536	-		ABIE53_002317	0.81	-2.9
2,601,536	-		ABIE53_002317	0.81	-2.3
2,601,536	-		ABIE53_002317	0.81	-2.0
2,601,536	-		ABIE53_002317	0.81	-1.0
2,601,611	+		ABIE53_002317	0.86	-0.5
2,601,650	+		ABIE53_002317	0.90	-3.3
2,601,650	+		ABIE53_002317	0.90	-2.2
2,601,651	-		ABIE53_002317	0.90	-3.8
2,601,694	+				-1.5
2,601,694	+				-1.9
2,601,694	+				-2.9
2,601,694	+				-2.8
2,601,695	-				-1.8
2,601,695	-				-1.2
2,601,796	+				-1.2
2,601,843	+				-1.2
2,601,844	+				-1.3
2,601,844	+				-2.1
2,601,844	+				-0.5
2,601,844	+				-1.0
2,601,844	+				-2.0
2,601,844	+				-4.1
2,601,845	-				-1.9
2,601,845	-				+1.8
2,601,845	-				-2.4
2,601,845	-				-2.5
2,601,845	-				-2.1
2,601,845	-				+0.2
2,601,845	-				+0.2
2,601,845	-				-1.4
2,601,912	+				-3.2
2,601,912	+				-1.0
2,601,913	-				-1.6
2,601,913	-				-0.7
2,601,913	-				-1.0
2,601,939	+				-3.7
2,601,940	-				-1.4
2,601,940	-				-1.9
2,601,976	-				-3.3
2,602,120	-		ABIE53_002318	0.11	-2.5
2,602,120	-		ABIE53_002318	0.11	-0.5
2,602,323	+		ABIE53_002318	0.21	-0.8
2,602,323	+		ABIE53_002318	0.21	-3.6
2,602,323	+		ABIE53_002318	0.21	-1.5
2,602,323	+		ABIE53_002318	0.21	-1.4
2,602,323	+		ABIE53_002318	0.21	-2.4
2,602,323	+		ABIE53_002318	0.21	-0.4
2,602,323	+		ABIE53_002318	0.21	-2.9
2,602,323	+		ABIE53_002318	0.21	+1.1
2,602,324	-		ABIE53_002318	0.21	-1.9
2,602,324	-		ABIE53_002318	0.21	-3.4
2,602,324	-		ABIE53_002318	0.21	-0.8
2,602,333	-		ABIE53_002318	0.22	-0.2
2,602,356	+		ABIE53_002318	0.23	-1.5
2,602,366	-		ABIE53_002318	0.23	+0.2
2,602,366	-		ABIE53_002318	0.23	-2.0
2,602,377	+		ABIE53_002318	0.24	-2.6
2,602,378	-		ABIE53_002318	0.24	-1.4
2,602,449	+		ABIE53_002318	0.28	-3.7
2,602,449	+		ABIE53_002318	0.28	-1.4
2,602,449	+		ABIE53_002318	0.28	-2.2
2,602,450	-		ABIE53_002318	0.28	-3.9
2,602,506	+		ABIE53_002318	0.31	-2.6
2,602,506	+		ABIE53_002318	0.31	-4.0
2,602,506	+		ABIE53_002318	0.31	-0.5
2,602,506	+		ABIE53_002318	0.31	-2.5
2,602,506	+		ABIE53_002318	0.31	-1.6
2,602,506	+		ABIE53_002318	0.31	-5.0
2,602,506	+		ABIE53_002318	0.31	-3.2
2,602,506	+		ABIE53_002318	0.31	-5.2
2,602,507	-		ABIE53_002318	0.31	-0.3
2,602,507	-		ABIE53_002318	0.31	-2.2
2,602,507	-		ABIE53_002318	0.31	-3.3
2,602,507	-		ABIE53_002318	0.31	-0.8
2,602,507	-		ABIE53_002318	0.31	-1.2
2,602,507	-		ABIE53_002318	0.31	-1.2
2,602,507	-		ABIE53_002318	0.31	-1.8
2,602,507	-		ABIE53_002318	0.31	-1.2
2,602,507	-		ABIE53_002318	0.31	-2.3
2,602,633	-		ABIE53_002318	0.37	+0.8
2,602,642	-		ABIE53_002318	0.38	-1.6
2,602,687	-		ABIE53_002318	0.40	-5.0
2,602,687	-		ABIE53_002318	0.40	-2.4