Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5901

Experiment: nitrogen source Ammonium chloride 20mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5899 and Pf1N1B4_5900 overlap by 29 nucleotidesPf1N1B4_5900 and Pf1N1B4_5901 are separated by 57 nucleotidesPf1N1B4_5901 and Pf1N1B4_5902 are separated by 305 nucleotidesPf1N1B4_5902 and Pf1N1B4_5903 are separated by 2 nucleotidesPf1N1B4_5903 and Pf1N1B4_5904 overlap by 12 nucleotides Pf1N1B4_5899 - FIG00954746: hypothetical protein, at 343,337 to 344,551 _5899 Pf1N1B4_5900 - Cellobiose phosphotransferase system YdjC-like protein, at 344,523 to 345,335 _5900 Pf1N1B4_5901 - hypothetical protein, at 345,393 to 346,082 _5901 Pf1N1B4_5902 - FIG022160: hypothetical toxin, at 346,388 to 346,528 _5902 Pf1N1B4_5903 - FIG045511: hypothetical antitoxin (to FIG022160: hypothetical toxin), at 346,531 to 346,839 _5903 Pf1N1B4_5904 - FIG00955320: hypothetical protein, at 346,828 to 347,736 _5904 Position (kb) 345 346 347Strain fitness (log2 ratio) -2 -1 0 1 2at 344.722 kb on - strand, within Pf1N1B4_5900at 345.011 kb on + strand, within Pf1N1B4_5900at 345.094 kb on + strand, within Pf1N1B4_5900at 345.094 kb on + strand, within Pf1N1B4_5900at 345.094 kb on + strand, within Pf1N1B4_5900at 345.094 kb on + strand, within Pf1N1B4_5900at 345.094 kb on + strand, within Pf1N1B4_5900at 345.094 kb on + strand, within Pf1N1B4_5900at 345.094 kb on + strand, within Pf1N1B4_5900at 345.094 kb on + strand, within Pf1N1B4_5900at 345.094 kb on + strand, within Pf1N1B4_5900at 345.095 kb on - strand, within Pf1N1B4_5900at 345.095 kb on - strand, within Pf1N1B4_5900at 345.095 kb on - strand, within Pf1N1B4_5900at 345.095 kb on - strand, within Pf1N1B4_5900at 345.095 kb on - strand, within Pf1N1B4_5900at 345.195 kb on + strand, within Pf1N1B4_5900at 345.195 kb on + strandat 345.195 kb on + strand, within Pf1N1B4_5900at 345.196 kb on - strand, within Pf1N1B4_5900at 345.316 kb on + strandat 345.317 kb on - strandat 345.471 kb on + strand, within Pf1N1B4_5901at 345.471 kb on + strand, within Pf1N1B4_5901at 345.472 kb on - strandat 345.477 kb on + strand, within Pf1N1B4_5901at 345.478 kb on - strand, within Pf1N1B4_5901at 345.478 kb on - strand, within Pf1N1B4_5901at 345.606 kb on + strand, within Pf1N1B4_5901at 345.607 kb on - strand, within Pf1N1B4_5901at 345.607 kb on - strand, within Pf1N1B4_5901at 345.607 kb on - strand, within Pf1N1B4_5901at 345.669 kb on + strand, within Pf1N1B4_5901at 345.669 kb on + strand, within Pf1N1B4_5901at 345.669 kb on + strand, within Pf1N1B4_5901at 345.669 kb on + strand, within Pf1N1B4_5901at 345.669 kb on + strandat 345.669 kb on + strand, within Pf1N1B4_5901at 345.669 kb on + strandat 345.669 kb on + strand, within Pf1N1B4_5901at 345.670 kb on - strand, within Pf1N1B4_5901at 345.670 kb on - strandat 345.670 kb on - strand, within Pf1N1B4_5901at 345.670 kb on - strand, within Pf1N1B4_5901at 345.670 kb on - strandat 345.670 kb on - strand, within Pf1N1B4_5901at 345.670 kb on - strand, within Pf1N1B4_5901at 345.670 kb on - strand, within Pf1N1B4_5901at 345.670 kb on - strand, within Pf1N1B4_5901at 345.670 kb on - strand, within Pf1N1B4_5901at 345.670 kb on - strand, within Pf1N1B4_5901at 345.670 kb on - strand, within Pf1N1B4_5901at 345.670 kb on - strand, within Pf1N1B4_5901at 345.670 kb on - strand, within Pf1N1B4_5901at 345.670 kb on - strand, within Pf1N1B4_5901at 345.723 kb on + strand, within Pf1N1B4_5901at 345.723 kb on + strandat 345.738 kb on + strand, within Pf1N1B4_5901at 345.738 kb on + strand, within Pf1N1B4_5901at 345.739 kb on - strand, within Pf1N1B4_5901at 345.739 kb on - strand, within Pf1N1B4_5901at 345.739 kb on - strand, within Pf1N1B4_5901at 345.739 kb on - strand, within Pf1N1B4_5901at 345.808 kb on - strand, within Pf1N1B4_5901at 345.846 kb on - strand, within Pf1N1B4_5901at 345.943 kb on - strand, within Pf1N1B4_5901at 345.972 kb on + strand, within Pf1N1B4_5901at 345.973 kb on - strand, within Pf1N1B4_5901at 346.015 kb on - strandat 346.181 kb on - strandat 346.181 kb on - strandat 346.223 kb on + strandat 346.224 kb on - strandat 346.224 kb on - strandat 346.224 kb on - strandat 346.242 kb on - strandat 346.247 kb on - strandat 346.432 kb on - strand, within Pf1N1B4_5902at 346.527 kb on - strandat 346.598 kb on - strandat 346.767 kb on - strand, within Pf1N1B4_5903at 346.856 kb on - strandat 346.886 kb on + strandat 346.928 kb on + strand, within Pf1N1B4_5904at 346.929 kb on - strand, within Pf1N1B4_5904at 347.034 kb on - strand, within Pf1N1B4_5904

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source Ammonium chloride 20mM
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344,722 - Pf1N1B4_5900 0.24 -0.3
345,011 + Pf1N1B4_5900 0.60 -0.8
345,094 + Pf1N1B4_5900 0.70 -2.0
345,094 + Pf1N1B4_5900 0.70 -0.7
345,094 + Pf1N1B4_5900 0.70 +0.5
345,094 + Pf1N1B4_5900 0.70 -0.2
345,094 + Pf1N1B4_5900 0.70 -0.1
345,094 + Pf1N1B4_5900 0.70 -2.3
345,094 + Pf1N1B4_5900 0.70 -0.7
345,094 + Pf1N1B4_5900 0.70 +0.7
345,094 + Pf1N1B4_5900 0.70 -1.5
345,095 - Pf1N1B4_5900 0.70 -0.3
345,095 - Pf1N1B4_5900 0.70 -0.3
345,095 - Pf1N1B4_5900 0.70 -0.6
345,095 - Pf1N1B4_5900 0.70 +0.1
345,095 - Pf1N1B4_5900 0.70 +1.7
345,195 + Pf1N1B4_5900 0.83 -0.6
345,195 + +0.2
345,195 + Pf1N1B4_5900 0.83 -0.0
345,196 - Pf1N1B4_5900 0.83 -0.4
345,316 + +0.2
345,317 - -1.2
345,471 + Pf1N1B4_5901 0.11 -1.4
345,471 + Pf1N1B4_5901 0.11 -0.3
345,472 - -0.8
345,477 + Pf1N1B4_5901 0.12 -0.0
345,478 - Pf1N1B4_5901 0.12 +0.3
345,478 - Pf1N1B4_5901 0.12 +1.3
345,606 + Pf1N1B4_5901 0.31 +1.1
345,607 - Pf1N1B4_5901 0.31 +1.6
345,607 - Pf1N1B4_5901 0.31 -0.4
345,607 - Pf1N1B4_5901 0.31 +0.3
345,669 + Pf1N1B4_5901 0.40 +0.7
345,669 + Pf1N1B4_5901 0.40 -0.7
345,669 + Pf1N1B4_5901 0.40 -1.9
345,669 + Pf1N1B4_5901 0.40 +0.4
345,669 + +0.9
345,669 + Pf1N1B4_5901 0.40 -1.1
345,669 + -0.4
345,669 + Pf1N1B4_5901 0.40 +0.9
345,670 - Pf1N1B4_5901 0.40 -2.1
345,670 - -1.3
345,670 - Pf1N1B4_5901 0.40 -1.0
345,670 - Pf1N1B4_5901 0.40 -0.3
345,670 - -2.0
345,670 - Pf1N1B4_5901 0.40 +0.2
345,670 - Pf1N1B4_5901 0.40 +0.7
345,670 - Pf1N1B4_5901 0.40 +1.4
345,670 - Pf1N1B4_5901 0.40 +0.5
345,670 - Pf1N1B4_5901 0.40 -2.6
345,670 - Pf1N1B4_5901 0.40 -0.3
345,670 - Pf1N1B4_5901 0.40 +0.6
345,670 - Pf1N1B4_5901 0.40 -1.5
345,670 - Pf1N1B4_5901 0.40 -1.2
345,670 - Pf1N1B4_5901 0.40 -0.3
345,723 + Pf1N1B4_5901 0.48 +1.2
345,723 + -1.6
345,738 + Pf1N1B4_5901 0.50 +1.4
345,738 + Pf1N1B4_5901 0.50 +1.1
345,739 - Pf1N1B4_5901 0.50 +1.3
345,739 - Pf1N1B4_5901 0.50 +0.9
345,739 - Pf1N1B4_5901 0.50 +0.1
345,739 - Pf1N1B4_5901 0.50 +0.0
345,808 - Pf1N1B4_5901 0.60 +1.0
345,846 - Pf1N1B4_5901 0.66 -0.1
345,943 - Pf1N1B4_5901 0.80 -0.4
345,972 + Pf1N1B4_5901 0.84 -0.7
345,973 - Pf1N1B4_5901 0.84 +2.0
346,015 - -1.1
346,181 - -0.6
346,181 - +0.7
346,223 + -1.2
346,224 - +0.2
346,224 - +0.2
346,224 - +1.4
346,242 - -1.5
346,247 - -1.8
346,432 - Pf1N1B4_5902 0.31 -0.5
346,527 - -0.4
346,598 - +0.2
346,767 - Pf1N1B4_5903 0.76 +0.5
346,856 - -0.6
346,886 + +0.6
346,928 + Pf1N1B4_5904 0.11 +0.3
346,929 - Pf1N1B4_5904 0.11 -0.7
347,034 - Pf1N1B4_5904 0.23 -0.3

Or see this region's nucleotide sequence