Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3637

Experiment: nitrogen source Ammonium chloride 20mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_3635 and Pf1N1B4_3636 are separated by 0 nucleotidesPf1N1B4_3636 and Pf1N1B4_3637 are separated by 177 nucleotidesPf1N1B4_3637 and Pf1N1B4_3638 overlap by 4 nucleotides Pf1N1B4_3635 - Positive regulator of CheA protein activity (CheW), at 4,043,421 to 4,043,906 _3635 Pf1N1B4_3636 - FIG00953562: hypothetical protein, at 4,043,907 to 4,044,299 _3636 Pf1N1B4_3637 - FlhB domain protein, at 4,044,477 to 4,044,806 _3637 Pf1N1B4_3638 - FIG00955434: hypothetical protein, at 4,044,803 to 4,046,377 _3638 Position (kb) 4044 4045Strain fitness (log2 ratio) -2 -1 0 1at 4043.502 kb on + strand, within Pf1N1B4_3635at 4043.541 kb on + strand, within Pf1N1B4_3635at 4043.745 kb on + strand, within Pf1N1B4_3635at 4043.900 kb on + strandat 4043.976 kb on + strand, within Pf1N1B4_3636at 4043.977 kb on - strand, within Pf1N1B4_3636at 4044.341 kb on + strandat 4044.341 kb on + strandat 4044.341 kb on + strandat 4044.341 kb on + strandat 4044.350 kb on + strandat 4044.350 kb on + strandat 4044.350 kb on + strandat 4044.351 kb on - strandat 4044.481 kb on + strandat 4044.552 kb on - strand, within Pf1N1B4_3637at 4044.552 kb on - strand, within Pf1N1B4_3637at 4044.552 kb on - strand, within Pf1N1B4_3637at 4044.598 kb on + strand, within Pf1N1B4_3637at 4044.599 kb on - strand, within Pf1N1B4_3637at 4044.615 kb on - strand, within Pf1N1B4_3637at 4044.683 kb on - strand, within Pf1N1B4_3637at 4044.764 kb on - strand, within Pf1N1B4_3637at 4044.957 kb on + strandat 4045.438 kb on + strand, within Pf1N1B4_3638at 4045.439 kb on - strand, within Pf1N1B4_3638at 4045.618 kb on + strand, within Pf1N1B4_3638at 4045.618 kb on + strand, within Pf1N1B4_3638at 4045.661 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source Ammonium chloride 20mM
remove
4,043,502 + Pf1N1B4_3635 0.17 -0.2
4,043,541 + Pf1N1B4_3635 0.25 -0.2
4,043,745 + Pf1N1B4_3635 0.67 -1.0
4,043,900 + -0.8
4,043,976 + Pf1N1B4_3636 0.18 -0.6
4,043,977 - Pf1N1B4_3636 0.18 +0.1
4,044,341 + -1.1
4,044,341 + -0.3
4,044,341 + +0.0
4,044,341 + -0.9
4,044,350 + -1.0
4,044,350 + -1.0
4,044,350 + -0.4
4,044,351 - +0.2
4,044,481 + +0.0
4,044,552 - Pf1N1B4_3637 0.23 -0.9
4,044,552 - Pf1N1B4_3637 0.23 -0.6
4,044,552 - Pf1N1B4_3637 0.23 -1.4
4,044,598 + Pf1N1B4_3637 0.37 -2.0
4,044,599 - Pf1N1B4_3637 0.37 -1.1
4,044,615 - Pf1N1B4_3637 0.42 -1.2
4,044,683 - Pf1N1B4_3637 0.62 -0.5
4,044,764 - Pf1N1B4_3637 0.87 +1.4
4,044,957 + +0.8
4,045,438 + Pf1N1B4_3638 0.40 -0.4
4,045,439 - Pf1N1B4_3638 0.40 +0.0
4,045,618 + Pf1N1B4_3638 0.52 -1.0
4,045,618 + Pf1N1B4_3638 0.52 -0.2
4,045,661 + -2.0

Or see this region's nucleotide sequence