Experiment: nitrogen source Ammonium chloride 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3635 and Pf1N1B4_3636 are separated by 0 nucleotides Pf1N1B4_3636 and Pf1N1B4_3637 are separated by 177 nucleotides Pf1N1B4_3637 and Pf1N1B4_3638 overlap by 4 nucleotides
Pf1N1B4_3635 - Positive regulator of CheA protein activity (CheW), at 4,043,421 to 4,043,906
_3635
Pf1N1B4_3636 - FIG00953562: hypothetical protein, at 4,043,907 to 4,044,299
_3636
Pf1N1B4_3637 - FlhB domain protein, at 4,044,477 to 4,044,806
_3637
Pf1N1B4_3638 - FIG00955434: hypothetical protein, at 4,044,803 to 4,046,377
_3638
Position (kb)
4044
4045 Strain fitness (log2 ratio)
-2
-1
0
1 at 4043.502 kb on + strand, within Pf1N1B4_3635 at 4043.541 kb on + strand, within Pf1N1B4_3635 at 4043.745 kb on + strand, within Pf1N1B4_3635 at 4043.900 kb on + strand at 4043.976 kb on + strand, within Pf1N1B4_3636 at 4043.977 kb on - strand, within Pf1N1B4_3636 at 4044.341 kb on + strand at 4044.341 kb on + strand at 4044.341 kb on + strand at 4044.341 kb on + strand at 4044.350 kb on + strand at 4044.350 kb on + strand at 4044.350 kb on + strand at 4044.351 kb on - strand at 4044.481 kb on + strand at 4044.552 kb on - strand, within Pf1N1B4_3637 at 4044.552 kb on - strand, within Pf1N1B4_3637 at 4044.552 kb on - strand, within Pf1N1B4_3637 at 4044.598 kb on + strand, within Pf1N1B4_3637 at 4044.599 kb on - strand, within Pf1N1B4_3637 at 4044.615 kb on - strand, within Pf1N1B4_3637 at 4044.683 kb on - strand, within Pf1N1B4_3637 at 4044.764 kb on - strand, within Pf1N1B4_3637 at 4044.957 kb on + strand at 4045.438 kb on + strand, within Pf1N1B4_3638 at 4045.439 kb on - strand, within Pf1N1B4_3638 at 4045.618 kb on + strand, within Pf1N1B4_3638 at 4045.618 kb on + strand, within Pf1N1B4_3638 at 4045.661 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source Ammonium chloride 20mM remove 4,043,502 + Pf1N1B4_3635 0.17 -0.2 4,043,541 + Pf1N1B4_3635 0.25 -0.2 4,043,745 + Pf1N1B4_3635 0.67 -1.0 4,043,900 + -0.8 4,043,976 + Pf1N1B4_3636 0.18 -0.6 4,043,977 - Pf1N1B4_3636 0.18 +0.1 4,044,341 + -1.1 4,044,341 + -0.3 4,044,341 + +0.0 4,044,341 + -0.9 4,044,350 + -1.0 4,044,350 + -1.0 4,044,350 + -0.4 4,044,351 - +0.2 4,044,481 + +0.0 4,044,552 - Pf1N1B4_3637 0.23 -0.9 4,044,552 - Pf1N1B4_3637 0.23 -0.6 4,044,552 - Pf1N1B4_3637 0.23 -1.4 4,044,598 + Pf1N1B4_3637 0.37 -2.0 4,044,599 - Pf1N1B4_3637 0.37 -1.1 4,044,615 - Pf1N1B4_3637 0.42 -1.2 4,044,683 - Pf1N1B4_3637 0.62 -0.5 4,044,764 - Pf1N1B4_3637 0.87 +1.4 4,044,957 + +0.8 4,045,438 + Pf1N1B4_3638 0.40 -0.4 4,045,439 - Pf1N1B4_3638 0.40 +0.0 4,045,618 + Pf1N1B4_3638 0.52 -1.0 4,045,618 + Pf1N1B4_3638 0.52 -0.2 4,045,661 + -2.0
Or see this region's nucleotide sequence