Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS22605 and RALBFv3_RS22610 are separated by 58 nucleotides RALBFv3_RS22610 and RALBFv3_RS22615 overlap by 14 nucleotides RALBFv3_RS22615 and RALBFv3_RS22620 overlap by 104 nucleotides RALBFv3_RS22620 and RALBFv3_RS22625 are separated by 50 nucleotides RALBFv3_RS22625 and RALBFv3_RS22630 are separated by 30 nucleotides
RALBFv3_RS22605: RALBFv3_RS22605 - sulfotransferase, at 1,833,266 to 1,834,186
_RS22605
RALBFv3_RS22610: RALBFv3_RS22610 - adenylyl-sulfate kinase, at 1,834,245 to 1,834,862
_RS22610
RALBFv3_RS22615: RALBFv3_RS22615 - non-ribosomal peptide synthetase, at 1,834,849 to 1,843,542
_RS22615
RALBFv3_RS22620: RALBFv3_RS22620 - hypothetical protein, at 1,843,439 to 1,843,822
_RS22620
RALBFv3_RS22625: RALBFv3_RS22625 - MbtH family protein, at 1,843,873 to 1,844,070
_RS22625
RALBFv3_RS22630: RALBFv3_RS22630 - MATE family efflux transporter, at 1,844,101 to 1,845,555
_RS22630
Position (kb) 1834
1835
1836
1837
1838
1839
1840
1841
1842
1843
1844 Strain fitness (log2 ratio) -1
0
1
2
3 at 1833.854 kb on + strand, within RALBFv3_RS22605 at 1833.854 kb on + strand, within RALBFv3_RS22605 at 1833.854 kb on + strand, within RALBFv3_RS22605 at 1833.854 kb on + strand, within RALBFv3_RS22605 at 1833.854 kb on + strand, within RALBFv3_RS22605 at 1833.854 kb on + strand, within RALBFv3_RS22605 at 1833.854 kb on + strand, within RALBFv3_RS22605 at 1833.855 kb on - strand, within RALBFv3_RS22605 at 1833.855 kb on - strand, within RALBFv3_RS22605 at 1833.857 kb on - strand, within RALBFv3_RS22605 at 1833.906 kb on - strand, within RALBFv3_RS22605 at 1834.410 kb on + strand, within RALBFv3_RS22610 at 1834.410 kb on - strand, within RALBFv3_RS22610 at 1834.411 kb on - strand, within RALBFv3_RS22610 at 1834.411 kb on - strand, within RALBFv3_RS22610 at 1834.411 kb on - strand, within RALBFv3_RS22610 at 1834.411 kb on - strand, within RALBFv3_RS22610 at 1834.411 kb on - strand, within RALBFv3_RS22610 at 1834.411 kb on - strand, within RALBFv3_RS22610 at 1834.411 kb on - strand, within RALBFv3_RS22610 at 1834.411 kb on - strand, within RALBFv3_RS22610 at 1834.674 kb on + strand, within RALBFv3_RS22610 at 1834.729 kb on - strand, within RALBFv3_RS22610 at 1835.003 kb on - strand at 1835.003 kb on - strand at 1835.149 kb on + strand at 1835.171 kb on - strand at 1835.686 kb on + strand at 1835.765 kb on - strand, within RALBFv3_RS22615 at 1836.020 kb on - strand, within RALBFv3_RS22615 at 1836.217 kb on + strand, within RALBFv3_RS22615 at 1836.218 kb on - strand, within RALBFv3_RS22615 at 1836.269 kb on - strand, within RALBFv3_RS22615 at 1836.293 kb on - strand, within RALBFv3_RS22615 at 1836.293 kb on - strand, within RALBFv3_RS22615 at 1836.687 kb on + strand, within RALBFv3_RS22615 at 1836.688 kb on - strand, within RALBFv3_RS22615 at 1836.757 kb on + strand, within RALBFv3_RS22615 at 1836.757 kb on + strand, within RALBFv3_RS22615 at 1836.757 kb on + strand, within RALBFv3_RS22615 at 1836.757 kb on + strand, within RALBFv3_RS22615 at 1836.758 kb on - strand, within RALBFv3_RS22615 at 1836.758 kb on - strand, within RALBFv3_RS22615 at 1836.886 kb on + strand, within RALBFv3_RS22615 at 1836.887 kb on - strand, within RALBFv3_RS22615 at 1836.887 kb on - strand, within RALBFv3_RS22615 at 1836.984 kb on - strand, within RALBFv3_RS22615 at 1837.202 kb on - strand, within RALBFv3_RS22615 at 1837.210 kb on + strand, within RALBFv3_RS22615 at 1837.210 kb on + strand, within RALBFv3_RS22615 at 1837.211 kb on - strand, within RALBFv3_RS22615 at 1837.282 kb on + strand, within RALBFv3_RS22615 at 1837.664 kb on - strand, within RALBFv3_RS22615 at 1837.718 kb on + strand, within RALBFv3_RS22615 at 1838.175 kb on + strand, within RALBFv3_RS22615 at 1838.175 kb on + strand, within RALBFv3_RS22615 at 1838.175 kb on + strand, within RALBFv3_RS22615 at 1838.175 kb on + strand, within RALBFv3_RS22615 at 1838.176 kb on - strand, within RALBFv3_RS22615 at 1838.179 kb on + strand, within RALBFv3_RS22615 at 1838.180 kb on - strand, within RALBFv3_RS22615 at 1838.180 kb on - strand, within RALBFv3_RS22615 at 1838.180 kb on - strand, within RALBFv3_RS22615 at 1838.326 kb on + strand, within RALBFv3_RS22615 at 1838.536 kb on + strand, within RALBFv3_RS22615 at 1838.545 kb on + strand, within RALBFv3_RS22615 at 1838.545 kb on + strand, within RALBFv3_RS22615 at 1838.545 kb on + strand, within RALBFv3_RS22615 at 1838.545 kb on + strand, within RALBFv3_RS22615 at 1838.546 kb on - strand, within RALBFv3_RS22615 at 1838.689 kb on + strand, within RALBFv3_RS22615 at 1838.690 kb on - strand, within RALBFv3_RS22615 at 1838.690 kb on - strand, within RALBFv3_RS22615 at 1838.690 kb on - strand, within RALBFv3_RS22615 at 1838.980 kb on + strand, within RALBFv3_RS22615 at 1838.980 kb on + strand, within RALBFv3_RS22615 at 1838.980 kb on + strand, within RALBFv3_RS22615 at 1838.981 kb on - strand, within RALBFv3_RS22615 at 1838.981 kb on - strand, within RALBFv3_RS22615 at 1838.981 kb on - strand, within RALBFv3_RS22615 at 1839.221 kb on - strand, within RALBFv3_RS22615 at 1839.470 kb on - strand, within RALBFv3_RS22615 at 1839.494 kb on - strand, within RALBFv3_RS22615 at 1839.952 kb on + strand, within RALBFv3_RS22615 at 1839.952 kb on + strand, within RALBFv3_RS22615 at 1839.953 kb on - strand, within RALBFv3_RS22615 at 1839.953 kb on - strand, within RALBFv3_RS22615 at 1839.953 kb on - strand, within RALBFv3_RS22615 at 1840.051 kb on - strand, within RALBFv3_RS22615 at 1840.195 kb on + strand, within RALBFv3_RS22615 at 1840.195 kb on + strand, within RALBFv3_RS22615 at 1840.342 kb on + strand, within RALBFv3_RS22615 at 1840.396 kb on + strand, within RALBFv3_RS22615 at 1840.396 kb on + strand, within RALBFv3_RS22615 at 1840.405 kb on + strand, within RALBFv3_RS22615 at 1840.405 kb on + strand, within RALBFv3_RS22615 at 1840.405 kb on + strand, within RALBFv3_RS22615 at 1840.406 kb on - strand, within RALBFv3_RS22615 at 1840.406 kb on - strand, within RALBFv3_RS22615 at 1840.858 kb on + strand at 1840.858 kb on + strand, within RALBFv3_RS22615 at 1840.859 kb on - strand, within RALBFv3_RS22615 at 1841.114 kb on - strand, within RALBFv3_RS22615 at 1841.174 kb on + strand, within RALBFv3_RS22615 at 1841.233 kb on - strand, within RALBFv3_RS22615 at 1841.375 kb on - strand, within RALBFv3_RS22615 at 1841.521 kb on + strand, within RALBFv3_RS22615 at 1841.522 kb on - strand, within RALBFv3_RS22615 at 1841.522 kb on - strand, within RALBFv3_RS22615 at 1841.543 kb on - strand, within RALBFv3_RS22615 at 1841.543 kb on - strand, within RALBFv3_RS22615 at 1841.543 kb on - strand, within RALBFv3_RS22615 at 1841.543 kb on - strand, within RALBFv3_RS22615 at 1841.572 kb on + strand, within RALBFv3_RS22615 at 1841.573 kb on - strand, within RALBFv3_RS22615 at 1842.149 kb on + strand, within RALBFv3_RS22615 at 1842.188 kb on - strand, within RALBFv3_RS22615 at 1842.188 kb on - strand, within RALBFv3_RS22615 at 1842.442 kb on + strand, within RALBFv3_RS22615 at 1842.691 kb on + strand at 1842.692 kb on - strand at 1842.692 kb on - strand at 1842.716 kb on - strand at 1842.716 kb on - strand at 1843.179 kb on - strand at 1843.250 kb on + strand at 1843.250 kb on + strand at 1843.250 kb on + strand at 1843.250 kb on + strand at 1843.251 kb on - strand at 1843.251 kb on - strand at 1843.251 kb on - strand at 1843.252 kb on + strand at 1843.563 kb on + strand, within RALBFv3_RS22620 at 1844.021 kb on - strand, within RALBFv3_RS22625 at 1844.021 kb on - strand, within RALBFv3_RS22625 at 1844.207 kb on + strand at 1844.208 kb on - strand at 1844.416 kb on - strand, within RALBFv3_RS22630 at 1844.528 kb on - strand, within RALBFv3_RS22630
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days remove 1,833,854 + RALBFv3_RS22605 0.64 +1.0 1,833,854 + RALBFv3_RS22605 0.64 +0.0 1,833,854 + RALBFv3_RS22605 0.64 -0.4 1,833,854 + RALBFv3_RS22605 0.64 -0.1 1,833,854 + RALBFv3_RS22605 0.64 -0.0 1,833,854 + RALBFv3_RS22605 0.64 -1.0 1,833,854 + RALBFv3_RS22605 0.64 -0.3 1,833,855 - RALBFv3_RS22605 0.64 +0.0 1,833,855 - RALBFv3_RS22605 0.64 +2.5 1,833,857 - RALBFv3_RS22605 0.64 -0.5 1,833,906 - RALBFv3_RS22605 0.69 +0.2 1,834,410 + RALBFv3_RS22610 0.27 -0.0 1,834,410 - RALBFv3_RS22610 0.27 +0.5 1,834,411 - RALBFv3_RS22610 0.27 -0.4 1,834,411 - RALBFv3_RS22610 0.27 -0.8 1,834,411 - RALBFv3_RS22610 0.27 +1.6 1,834,411 - RALBFv3_RS22610 0.27 +0.5 1,834,411 - RALBFv3_RS22610 0.27 -0.1 1,834,411 - RALBFv3_RS22610 0.27 +0.4 1,834,411 - RALBFv3_RS22610 0.27 +1.5 1,834,411 - RALBFv3_RS22610 0.27 +0.4 1,834,674 + RALBFv3_RS22610 0.69 -1.1 1,834,729 - RALBFv3_RS22610 0.78 +0.0 1,835,003 - -0.2 1,835,003 - -0.1 1,835,149 + -0.7 1,835,171 - +1.0 1,835,686 + -1.5 1,835,765 - RALBFv3_RS22615 0.11 +1.5 1,836,020 - RALBFv3_RS22615 0.13 -0.2 1,836,217 + RALBFv3_RS22615 0.16 +0.0 1,836,218 - RALBFv3_RS22615 0.16 +3.4 1,836,269 - RALBFv3_RS22615 0.16 +0.9 1,836,293 - RALBFv3_RS22615 0.17 +1.0 1,836,293 - RALBFv3_RS22615 0.17 -0.1 1,836,687 + RALBFv3_RS22615 0.21 -0.5 1,836,688 - RALBFv3_RS22615 0.21 +0.9 1,836,757 + RALBFv3_RS22615 0.22 +0.2 1,836,757 + RALBFv3_RS22615 0.22 +0.1 1,836,757 + RALBFv3_RS22615 0.22 +1.6 1,836,757 + RALBFv3_RS22615 0.22 +0.5 1,836,758 - RALBFv3_RS22615 0.22 +0.7 1,836,758 - RALBFv3_RS22615 0.22 -0.3 1,836,886 + RALBFv3_RS22615 0.23 +0.1 1,836,887 - RALBFv3_RS22615 0.23 +0.2 1,836,887 - RALBFv3_RS22615 0.23 +0.6 1,836,984 - RALBFv3_RS22615 0.25 -1.3 1,837,202 - RALBFv3_RS22615 0.27 -0.2 1,837,210 + RALBFv3_RS22615 0.27 -0.3 1,837,210 + RALBFv3_RS22615 0.27 +1.0 1,837,211 - RALBFv3_RS22615 0.27 -0.1 1,837,282 + RALBFv3_RS22615 0.28 +1.0 1,837,664 - RALBFv3_RS22615 0.32 +1.0 1,837,718 + RALBFv3_RS22615 0.33 -1.4 1,838,175 + RALBFv3_RS22615 0.38 -0.4 1,838,175 + RALBFv3_RS22615 0.38 +0.1 1,838,175 + RALBFv3_RS22615 0.38 +1.0 1,838,175 + RALBFv3_RS22615 0.38 +0.1 1,838,176 - RALBFv3_RS22615 0.38 +0.4 1,838,179 + RALBFv3_RS22615 0.38 +1.0 1,838,180 - RALBFv3_RS22615 0.38 +1.0 1,838,180 - RALBFv3_RS22615 0.38 +0.2 1,838,180 - RALBFv3_RS22615 0.38 +0.0 1,838,326 + RALBFv3_RS22615 0.40 +0.1 1,838,536 + RALBFv3_RS22615 0.42 +1.2 1,838,545 + RALBFv3_RS22615 0.43 +0.7 1,838,545 + RALBFv3_RS22615 0.43 +0.2 1,838,545 + RALBFv3_RS22615 0.43 +1.0 1,838,545 + RALBFv3_RS22615 0.43 -0.3 1,838,546 - RALBFv3_RS22615 0.43 -1.0 1,838,689 + RALBFv3_RS22615 0.44 -0.3 1,838,690 - RALBFv3_RS22615 0.44 -0.3 1,838,690 - RALBFv3_RS22615 0.44 +0.8 1,838,690 - RALBFv3_RS22615 0.44 -0.2 1,838,980 + RALBFv3_RS22615 0.48 -1.2 1,838,980 + RALBFv3_RS22615 0.48 -0.5 1,838,980 + RALBFv3_RS22615 0.48 +0.1 1,838,981 - RALBFv3_RS22615 0.48 +0.8 1,838,981 - RALBFv3_RS22615 0.48 -0.3 1,838,981 - RALBFv3_RS22615 0.48 +2.6 1,839,221 - RALBFv3_RS22615 0.50 +2.0 1,839,470 - RALBFv3_RS22615 0.53 +1.3 1,839,494 - RALBFv3_RS22615 0.53 +0.1 1,839,952 + RALBFv3_RS22615 0.59 -0.7 1,839,952 + RALBFv3_RS22615 0.59 -0.1 1,839,953 - RALBFv3_RS22615 0.59 -0.5 1,839,953 - RALBFv3_RS22615 0.59 -1.1 1,839,953 - RALBFv3_RS22615 0.59 +0.7 1,840,051 - RALBFv3_RS22615 0.60 +0.8 1,840,195 + RALBFv3_RS22615 0.61 +0.0 1,840,195 + RALBFv3_RS22615 0.61 +0.0 1,840,342 + RALBFv3_RS22615 0.63 +0.5 1,840,396 + RALBFv3_RS22615 0.64 -1.0 1,840,396 + RALBFv3_RS22615 0.64 +0.4 1,840,405 + RALBFv3_RS22615 0.64 -1.5 1,840,405 + RALBFv3_RS22615 0.64 -0.7 1,840,405 + RALBFv3_RS22615 0.64 -1.3 1,840,406 - RALBFv3_RS22615 0.64 +0.2 1,840,406 - RALBFv3_RS22615 0.64 +0.8 1,840,858 + +1.0 1,840,858 + RALBFv3_RS22615 0.69 -0.3 1,840,859 - RALBFv3_RS22615 0.69 -0.7 1,841,114 - RALBFv3_RS22615 0.72 +0.5 1,841,174 + RALBFv3_RS22615 0.73 +0.0 1,841,233 - RALBFv3_RS22615 0.73 +0.2 1,841,375 - RALBFv3_RS22615 0.75 -0.2 1,841,521 + RALBFv3_RS22615 0.77 -0.2 1,841,522 - RALBFv3_RS22615 0.77 -0.3 1,841,522 - RALBFv3_RS22615 0.77 -1.5 1,841,543 - RALBFv3_RS22615 0.77 +0.4 1,841,543 - RALBFv3_RS22615 0.77 +2.6 1,841,543 - RALBFv3_RS22615 0.77 +0.1 1,841,543 - RALBFv3_RS22615 0.77 +0.4 1,841,572 + RALBFv3_RS22615 0.77 -0.2 1,841,573 - RALBFv3_RS22615 0.77 +1.9 1,842,149 + RALBFv3_RS22615 0.84 +0.6 1,842,188 - RALBFv3_RS22615 0.84 +1.0 1,842,188 - RALBFv3_RS22615 0.84 -0.9 1,842,442 + RALBFv3_RS22615 0.87 +0.1 1,842,691 + -0.5 1,842,692 - -1.0 1,842,692 - -1.1 1,842,716 - +0.5 1,842,716 - -0.2 1,843,179 - +0.9 1,843,250 + +1.0 1,843,250 + +1.0 1,843,250 + +0.0 1,843,250 + -0.5 1,843,251 - -0.3 1,843,251 - -0.3 1,843,251 - -0.7 1,843,252 + +0.0 1,843,563 + RALBFv3_RS22620 0.32 -0.1 1,844,021 - RALBFv3_RS22625 0.75 -1.3 1,844,021 - RALBFv3_RS22625 0.75 -0.6 1,844,207 + -0.5 1,844,208 - -0.4 1,844,416 - RALBFv3_RS22630 0.22 +1.8 1,844,528 - RALBFv3_RS22630 0.29 -0.4
Or see this region's nucleotide sequence