Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS03735 and RALBFv3_RS03740 are separated by 130 nucleotides RALBFv3_RS03740 and RALBFv3_RS03745 are separated by 44 nucleotides
RALBFv3_RS03735: RALBFv3_RS03735 - ZIP family metal transporter, at 821,953 to 822,759
_RS03735
RALBFv3_RS03740: RALBFv3_RS03740 - dienelactone hydrolase family protein, at 822,890 to 823,771
_RS03740
RALBFv3_RS03745: RALBFv3_RS03745 - NAD(P)/FAD-dependent oxidoreductase, at 823,816 to 825,141
_RS03745
Position (kb) 822
823
824 Strain fitness (log2 ratio) -2
-1
0
1
2 at 821.952 kb on - strand at 822.092 kb on + strand, within RALBFv3_RS03735 at 822.210 kb on - strand, within RALBFv3_RS03735 at 822.736 kb on + strand at 822.736 kb on + strand at 822.808 kb on + strand at 822.808 kb on + strand at 822.809 kb on - strand at 822.960 kb on + strand at 822.961 kb on - strand at 823.005 kb on + strand, within RALBFv3_RS03740 at 823.111 kb on - strand, within RALBFv3_RS03740 at 823.407 kb on + strand, within RALBFv3_RS03740 at 823.497 kb on + strand, within RALBFv3_RS03740 at 823.497 kb on + strand, within RALBFv3_RS03740 at 823.498 kb on - strand, within RALBFv3_RS03740 at 823.498 kb on - strand, within RALBFv3_RS03740 at 823.817 kb on + strand at 823.931 kb on + strand at 823.932 kb on - strand at 823.932 kb on - strand at 824.096 kb on + strand, within RALBFv3_RS03745 at 824.096 kb on + strand, within RALBFv3_RS03745 at 824.097 kb on - strand, within RALBFv3_RS03745 at 824.097 kb on - strand, within RALBFv3_RS03745 at 824.102 kb on + strand, within RALBFv3_RS03745 at 824.102 kb on + strand, within RALBFv3_RS03745 at 824.102 kb on + strand, within RALBFv3_RS03745 at 824.103 kb on - strand, within RALBFv3_RS03745 at 824.103 kb on - strand, within RALBFv3_RS03745 at 824.192 kb on + strand, within RALBFv3_RS03745 at 824.528 kb on + strand, within RALBFv3_RS03745
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days remove 821,952 - -0.1 822,092 + RALBFv3_RS03735 0.17 +1.6 822,210 - RALBFv3_RS03735 0.32 +1.0 822,736 + -1.0 822,736 + +2.0 822,808 + -0.6 822,808 + -0.2 822,809 - -0.3 822,960 + -0.2 822,961 - +0.3 823,005 + RALBFv3_RS03740 0.13 +0.2 823,111 - RALBFv3_RS03740 0.25 -0.9 823,407 + RALBFv3_RS03740 0.59 -0.1 823,497 + RALBFv3_RS03740 0.69 -0.0 823,497 + RALBFv3_RS03740 0.69 +0.3 823,498 - RALBFv3_RS03740 0.69 -0.3 823,498 - RALBFv3_RS03740 0.69 -2.0 823,817 + -0.2 823,931 + -0.0 823,932 - -0.1 823,932 - +0.8 824,096 + RALBFv3_RS03745 0.21 -0.3 824,096 + RALBFv3_RS03745 0.21 +0.1 824,097 - RALBFv3_RS03745 0.21 +0.7 824,097 - RALBFv3_RS03745 0.21 +0.8 824,102 + RALBFv3_RS03745 0.22 +0.3 824,102 + RALBFv3_RS03745 0.22 -1.4 824,102 + RALBFv3_RS03745 0.22 +0.6 824,103 - RALBFv3_RS03745 0.22 +0.2 824,103 - RALBFv3_RS03745 0.22 -0.3 824,192 + RALBFv3_RS03745 0.28 +0.3 824,528 + RALBFv3_RS03745 0.54 +2.6
Or see this region's nucleotide sequence