Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS02685 and RALBFv3_RS02690 are separated by 60 nucleotides RALBFv3_RS02690 and RALBFv3_RS02695 are separated by 186 nucleotides RALBFv3_RS02695 and RALBFv3_RS02700 are separated by 76 nucleotides
RALBFv3_RS02685: RALBFv3_RS02685 - bifunctional 2-methylcitrate dehydratase/aconitate hydratase, at 596,914 to 598,365
_RS02685
RALBFv3_RS02690: RALBFv3_RS02690 - aconitate hydratase AcnA, at 598,426 to 601,131
_RS02690
RALBFv3_RS02695: RALBFv3_RS02695 - hypothetical protein, at 601,318 to 601,563
_RS02695
RALBFv3_RS02700: RALBFv3_RS02700 - DUF2863 domain-containing protein, at 601,640 to 602,851
_RS02700
Position (kb) 598
599
600
601
602 Strain fitness (log2 ratio) -1
0
1
2 at 597.685 kb on + strand, within RALBFv3_RS02685 at 597.685 kb on + strand, within RALBFv3_RS02685 at 597.739 kb on + strand, within RALBFv3_RS02685 at 597.739 kb on + strand, within RALBFv3_RS02685 at 597.739 kb on + strand, within RALBFv3_RS02685 at 597.739 kb on + strand, within RALBFv3_RS02685 at 598.096 kb on + strand, within RALBFv3_RS02685 at 598.096 kb on + strand, within RALBFv3_RS02685 at 598.342 kb on + strand at 598.342 kb on + strand at 598.373 kb on + strand at 601.366 kb on + strand, within RALBFv3_RS02695 at 601.367 kb on - strand, within RALBFv3_RS02695 at 601.367 kb on - strand, within RALBFv3_RS02695 at 601.749 kb on - strand at 601.925 kb on + strand, within RALBFv3_RS02700 at 601.926 kb on - strand, within RALBFv3_RS02700 at 602.082 kb on - strand, within RALBFv3_RS02700
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days remove 597,685 + RALBFv3_RS02685 0.53 +1.0 597,685 + RALBFv3_RS02685 0.53 +0.4 597,739 + RALBFv3_RS02685 0.57 +1.0 597,739 + RALBFv3_RS02685 0.57 +1.4 597,739 + RALBFv3_RS02685 0.57 +2.0 597,739 + RALBFv3_RS02685 0.57 -0.7 598,096 + RALBFv3_RS02685 0.81 +1.5 598,096 + RALBFv3_RS02685 0.81 -0.7 598,342 + -1.4 598,342 + +1.0 598,373 + -0.9 601,366 + RALBFv3_RS02695 0.20 +1.0 601,367 - RALBFv3_RS02695 0.20 +0.6 601,367 - RALBFv3_RS02695 0.20 +1.2 601,749 - -0.3 601,925 + RALBFv3_RS02700 0.24 +1.0 601,926 - RALBFv3_RS02700 0.24 +2.0 602,082 - RALBFv3_RS02700 0.36 +1.3
Or see this region's nucleotide sequence