Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005620

Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_005619 and ABIE53_005620 are separated by 62 nucleotidesABIE53_005620 and ABIE53_005621 are separated by 10 nucleotides ABIE53_005619: ABIE53_005619 - 2-methylcitrate dehydratase PrpD, at 1,911,282 to 1,912,649 _005619 ABIE53_005620: ABIE53_005620 - acetolactate synthase-1/2/3 large subunit, at 1,912,712 to 1,914,529 _005620 ABIE53_005621: ABIE53_005621 - succinate-semialdehyde dehydrogenase/glutarate-semialdehyde dehydrogenase, at 1,914,540 to 1,916,006 _005621 Position (kb) 1912 1913 1914 1915Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1911.877 kb on - strand, within ABIE53_005619at 1911.877 kb on - strand, within ABIE53_005619at 1911.877 kb on - strand, within ABIE53_005619at 1911.935 kb on + strand, within ABIE53_005619at 1911.935 kb on + strand, within ABIE53_005619at 1911.935 kb on + strand, within ABIE53_005619at 1912.044 kb on + strand, within ABIE53_005619at 1912.044 kb on + strand, within ABIE53_005619at 1912.045 kb on - strand, within ABIE53_005619at 1912.045 kb on - strand, within ABIE53_005619at 1912.195 kb on + strand, within ABIE53_005619at 1912.196 kb on - strand, within ABIE53_005619at 1912.196 kb on - strand, within ABIE53_005619at 1912.255 kb on - strand, within ABIE53_005619at 1912.255 kb on - strand, within ABIE53_005619at 1912.255 kb on - strand, within ABIE53_005619at 1912.255 kb on - strand, within ABIE53_005619at 1912.255 kb on - strand, within ABIE53_005619at 1912.255 kb on - strand, within ABIE53_005619at 1912.255 kb on - strand, within ABIE53_005619at 1912.360 kb on + strand, within ABIE53_005619at 1912.449 kb on - strand, within ABIE53_005619at 1912.449 kb on - strand, within ABIE53_005619at 1912.466 kb on + strand, within ABIE53_005619at 1912.479 kb on + strand, within ABIE53_005619at 1912.641 kb on - strandat 1912.724 kb on - strandat 1912.799 kb on - strandat 1912.846 kb on + strandat 1912.961 kb on - strand, within ABIE53_005620at 1913.172 kb on - strand, within ABIE53_005620at 1913.172 kb on - strand, within ABIE53_005620at 1913.173 kb on + strand, within ABIE53_005620at 1913.173 kb on + strand, within ABIE53_005620at 1913.255 kb on - strand, within ABIE53_005620at 1913.276 kb on + strand, within ABIE53_005620at 1913.276 kb on + strand, within ABIE53_005620at 1913.277 kb on - strand, within ABIE53_005620at 1913.277 kb on - strand, within ABIE53_005620at 1913.278 kb on + strand, within ABIE53_005620at 1913.278 kb on + strand, within ABIE53_005620at 1913.278 kb on + strand, within ABIE53_005620at 1913.278 kb on + strand, within ABIE53_005620at 1913.591 kb on - strand, within ABIE53_005620at 1913.688 kb on + strand, within ABIE53_005620at 1913.766 kb on + strand, within ABIE53_005620at 1913.830 kb on + strand, within ABIE53_005620at 1913.831 kb on - strand, within ABIE53_005620at 1913.856 kb on - strand, within ABIE53_005620at 1913.916 kb on + strand, within ABIE53_005620at 1913.916 kb on + strand, within ABIE53_005620at 1913.917 kb on - strand, within ABIE53_005620at 1913.977 kb on + strand, within ABIE53_005620at 1913.985 kb on - strand, within ABIE53_005620at 1913.999 kb on - strand, within ABIE53_005620at 1913.999 kb on - strand, within ABIE53_005620at 1913.999 kb on - strand, within ABIE53_005620at 1914.094 kb on + strand, within ABIE53_005620at 1914.095 kb on - strand, within ABIE53_005620at 1914.193 kb on + strand, within ABIE53_005620at 1914.193 kb on + strand, within ABIE53_005620at 1914.193 kb on + strand, within ABIE53_005620at 1914.193 kb on + strand, within ABIE53_005620at 1914.193 kb on + strand, within ABIE53_005620at 1914.193 kb on + strand, within ABIE53_005620at 1914.194 kb on - strand, within ABIE53_005620at 1914.371 kb on - strandat 1914.371 kb on - strandat 1914.469 kb on + strandat 1914.539 kb on + strandat 1914.539 kb on + strandat 1914.539 kb on + strandat 1914.540 kb on - strandat 1914.579 kb on - strandat 1914.588 kb on + strandat 1914.589 kb on - strandat 1914.592 kb on + strandat 1914.593 kb on - strandat 1914.593 kb on - strandat 1914.623 kb on + strandat 1914.623 kb on + strandat 1914.624 kb on - strandat 1914.624 kb on - strandat 1914.624 kb on - strandat 1914.624 kb on - strandat 1914.751 kb on + strand, within ABIE53_005621at 1914.752 kb on - strand, within ABIE53_005621at 1914.874 kb on + strand, within ABIE53_005621at 1914.874 kb on + strand, within ABIE53_005621at 1914.927 kb on + strand, within ABIE53_005621at 1914.970 kb on + strand, within ABIE53_005621at 1914.971 kb on - strand, within ABIE53_005621at 1914.971 kb on - strand, within ABIE53_005621at 1915.029 kb on - strand, within ABIE53_005621at 1915.061 kb on - strand, within ABIE53_005621at 1915.100 kb on + strand, within ABIE53_005621at 1915.175 kb on + strand, within ABIE53_005621at 1915.235 kb on + strand, within ABIE53_005621at 1915.295 kb on + strand, within ABIE53_005621at 1915.434 kb on + strand, within ABIE53_005621at 1915.434 kb on + strand, within ABIE53_005621at 1915.434 kb on + strand, within ABIE53_005621at 1915.434 kb on + strand, within ABIE53_005621at 1915.435 kb on - strand, within ABIE53_005621at 1915.487 kb on - strand, within ABIE53_005621at 1915.487 kb on - strand, within ABIE53_005621

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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1,911,877 - ABIE53_005619 0.43 -0.3
1,911,877 - ABIE53_005619 0.43 -0.4
1,911,877 - ABIE53_005619 0.43 -1.9
1,911,935 + ABIE53_005619 0.48 -0.4
1,911,935 + ABIE53_005619 0.48 -1.9
1,911,935 + ABIE53_005619 0.48 +0.1
1,912,044 + ABIE53_005619 0.56 +0.1
1,912,044 + ABIE53_005619 0.56 +0.4
1,912,045 - ABIE53_005619 0.56 -1.8
1,912,045 - ABIE53_005619 0.56 +0.9
1,912,195 + ABIE53_005619 0.67 +1.7
1,912,196 - ABIE53_005619 0.67 +0.4
1,912,196 - ABIE53_005619 0.67 -1.8
1,912,255 - ABIE53_005619 0.71 -0.3
1,912,255 - ABIE53_005619 0.71 +0.3
1,912,255 - ABIE53_005619 0.71 +1.4
1,912,255 - ABIE53_005619 0.71 -0.9
1,912,255 - ABIE53_005619 0.71 +0.0
1,912,255 - ABIE53_005619 0.71 +0.6
1,912,255 - ABIE53_005619 0.71 -1.3
1,912,360 + ABIE53_005619 0.79 -0.8
1,912,449 - ABIE53_005619 0.85 -2.4
1,912,449 - ABIE53_005619 0.85 +0.1
1,912,466 + ABIE53_005619 0.87 +0.6
1,912,479 + ABIE53_005619 0.88 -0.6
1,912,641 - -1.1
1,912,724 - +0.9
1,912,799 - -0.7
1,912,846 + +0.1
1,912,961 - ABIE53_005620 0.14 -0.4
1,913,172 - ABIE53_005620 0.25 -0.9
1,913,172 - ABIE53_005620 0.25 -2.3
1,913,173 + ABIE53_005620 0.25 +0.6
1,913,173 + ABIE53_005620 0.25 +0.8
1,913,255 - ABIE53_005620 0.30 -0.4
1,913,276 + ABIE53_005620 0.31 -0.4
1,913,276 + ABIE53_005620 0.31 -2.0
1,913,277 - ABIE53_005620 0.31 -1.2
1,913,277 - ABIE53_005620 0.31 -2.2
1,913,278 + ABIE53_005620 0.31 +1.7
1,913,278 + ABIE53_005620 0.31 +0.3
1,913,278 + ABIE53_005620 0.31 -1.6
1,913,278 + ABIE53_005620 0.31 -1.9
1,913,591 - ABIE53_005620 0.48 +1.2
1,913,688 + ABIE53_005620 0.54 -1.6
1,913,766 + ABIE53_005620 0.58 +0.3
1,913,830 + ABIE53_005620 0.61 +0.4
1,913,831 - ABIE53_005620 0.62 -0.3
1,913,856 - ABIE53_005620 0.63 -0.8
1,913,916 + ABIE53_005620 0.66 -0.3
1,913,916 + ABIE53_005620 0.66 +0.1
1,913,917 - ABIE53_005620 0.66 -1.6
1,913,977 + ABIE53_005620 0.70 +1.4
1,913,985 - ABIE53_005620 0.70 -1.0
1,913,999 - ABIE53_005620 0.71 -0.4
1,913,999 - ABIE53_005620 0.71 +1.3
1,913,999 - ABIE53_005620 0.71 +0.0
1,914,094 + ABIE53_005620 0.76 -0.2
1,914,095 - ABIE53_005620 0.76 -0.9
1,914,193 + ABIE53_005620 0.81 -0.2
1,914,193 + ABIE53_005620 0.81 +2.0
1,914,193 + ABIE53_005620 0.81 -1.1
1,914,193 + ABIE53_005620 0.81 +0.1
1,914,193 + ABIE53_005620 0.81 -0.1
1,914,193 + ABIE53_005620 0.81 -1.0
1,914,194 - ABIE53_005620 0.82 +1.1
1,914,371 - -0.6
1,914,371 - -0.7
1,914,469 + -1.2
1,914,539 + +0.4
1,914,539 + -0.7
1,914,539 + +1.4
1,914,540 - -0.6
1,914,579 - -0.9
1,914,588 + -1.3
1,914,589 - -0.9
1,914,592 + -0.6
1,914,593 - -0.7
1,914,593 - +0.7
1,914,623 + -0.3
1,914,623 + -0.9
1,914,624 - -0.9
1,914,624 - +1.4
1,914,624 - -0.6
1,914,624 - +2.4
1,914,751 + ABIE53_005621 0.14 +0.4
1,914,752 - ABIE53_005621 0.14 -1.0
1,914,874 + ABIE53_005621 0.23 +0.1
1,914,874 + ABIE53_005621 0.23 +0.8
1,914,927 + ABIE53_005621 0.26 -0.2
1,914,970 + ABIE53_005621 0.29 -1.0
1,914,971 - ABIE53_005621 0.29 -0.9
1,914,971 - ABIE53_005621 0.29 +1.4
1,915,029 - ABIE53_005621 0.33 +1.8
1,915,061 - ABIE53_005621 0.36 -0.7
1,915,100 + ABIE53_005621 0.38 +1.1
1,915,175 + ABIE53_005621 0.43 -0.7
1,915,235 + ABIE53_005621 0.47 -1.3
1,915,295 + ABIE53_005621 0.51 -0.2
1,915,434 + ABIE53_005621 0.61 -0.1
1,915,434 + ABIE53_005621 0.61 -1.4
1,915,434 + ABIE53_005621 0.61 -0.4
1,915,434 + ABIE53_005621 0.61 -0.5
1,915,435 - ABIE53_005621 0.61 +2.8
1,915,487 - ABIE53_005621 0.65 +0.1
1,915,487 - ABIE53_005621 0.65 -0.6

Or see this region's nucleotide sequence