Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004705 and ABIE53_004706 are separated by 770 nucleotides ABIE53_004706 and ABIE53_004707 are separated by 709 nucleotides
ABIE53_004705: ABIE53_004705 - autotransporter adhesin, at 892,426 to 896,199
_004705
ABIE53_004706: ABIE53_004706 - 2-iminobutanoate/2-iminopropanoate deaminase, at 896,970 to 897,371
_004706
ABIE53_004707: ABIE53_004707 - H+/gluconate symporter-like permease, at 898,081 to 899,481
_004707
Position (kb) 896
897
898 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 895.990 kb on - strand at 895.998 kb on - strand at 895.998 kb on - strand at 896.079 kb on + strand at 896.091 kb on + strand at 896.092 kb on - strand at 896.097 kb on + strand at 896.098 kb on - strand at 896.098 kb on - strand at 896.098 kb on - strand at 896.098 kb on - strand at 896.123 kb on - strand at 896.194 kb on - strand at 896.277 kb on + strand at 896.278 kb on - strand at 896.301 kb on - strand at 896.387 kb on + strand at 896.391 kb on + strand at 896.391 kb on + strand at 896.391 kb on + strand at 896.391 kb on + strand at 896.392 kb on - strand at 896.392 kb on - strand at 896.435 kb on - strand at 896.458 kb on + strand at 896.458 kb on + strand at 896.459 kb on - strand at 896.464 kb on + strand at 896.464 kb on + strand at 896.464 kb on + strand at 896.471 kb on - strand at 896.471 kb on - strand at 896.475 kb on - strand at 896.475 kb on - strand at 896.551 kb on + strand at 896.684 kb on + strand at 896.691 kb on - strand at 896.693 kb on + strand at 896.731 kb on - strand at 896.731 kb on - strand at 896.731 kb on - strand at 896.794 kb on - strand at 896.808 kb on - strand at 897.074 kb on - strand, within ABIE53_004706 at 897.082 kb on + strand, within ABIE53_004706 at 897.082 kb on + strand, within ABIE53_004706 at 897.082 kb on + strand, within ABIE53_004706 at 897.083 kb on - strand, within ABIE53_004706 at 897.083 kb on - strand, within ABIE53_004706 at 897.103 kb on + strand, within ABIE53_004706 at 897.104 kb on - strand, within ABIE53_004706 at 897.144 kb on + strand, within ABIE53_004706 at 897.144 kb on + strand, within ABIE53_004706 at 897.145 kb on - strand, within ABIE53_004706 at 897.145 kb on - strand, within ABIE53_004706 at 897.145 kb on - strand, within ABIE53_004706 at 897.145 kb on - strand, within ABIE53_004706 at 897.407 kb on + strand at 897.407 kb on + strand at 897.407 kb on + strand at 897.407 kb on + strand at 897.407 kb on + strand at 897.408 kb on - strand at 897.408 kb on - strand at 897.472 kb on + strand at 897.472 kb on + strand at 897.472 kb on + strand at 897.718 kb on + strand at 897.719 kb on - strand at 897.754 kb on - strand at 897.757 kb on - strand at 897.767 kb on + strand at 897.828 kb on + strand at 897.856 kb on + strand at 897.857 kb on - strand at 898.082 kb on + strand at 898.082 kb on + strand at 898.083 kb on - strand at 898.100 kb on + strand at 898.101 kb on - strand at 898.101 kb on - strand at 898.103 kb on + strand at 898.103 kb on + strand at 898.103 kb on + strand at 898.104 kb on - strand at 898.221 kb on + strand, within ABIE53_004707 at 898.222 kb on - strand, within ABIE53_004707 at 898.287 kb on + strand, within ABIE53_004707 at 898.287 kb on + strand, within ABIE53_004707 at 898.287 kb on + strand, within ABIE53_004707 at 898.288 kb on - strand, within ABIE53_004707 at 898.368 kb on + strand, within ABIE53_004707
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 895,990 - -0.8 895,998 - -0.8 895,998 - -0.2 896,079 + -1.0 896,091 + +0.3 896,092 - +0.1 896,097 + -0.2 896,098 - -0.7 896,098 - +0.1 896,098 - -2.5 896,098 - -0.6 896,123 - -0.4 896,194 - -1.7 896,277 + +0.4 896,278 - +0.8 896,301 - -1.9 896,387 + -2.4 896,391 + -1.0 896,391 + +0.2 896,391 + -1.4 896,391 + -0.0 896,392 - -2.5 896,392 - -1.0 896,435 - -1.3 896,458 + -0.9 896,458 + +0.6 896,459 - +0.2 896,464 + +0.4 896,464 + +1.4 896,464 + -2.3 896,471 - -1.5 896,471 - -0.6 896,475 - -0.7 896,475 - -1.6 896,551 + -3.4 896,684 + -0.8 896,691 - -0.2 896,693 + +0.4 896,731 - +0.8 896,731 - -1.2 896,731 - -0.9 896,794 - +1.4 896,808 - +0.1 897,074 - ABIE53_004706 0.26 +0.8 897,082 + ABIE53_004706 0.28 -1.9 897,082 + ABIE53_004706 0.28 -1.3 897,082 + ABIE53_004706 0.28 -1.0 897,083 - ABIE53_004706 0.28 +0.6 897,083 - ABIE53_004706 0.28 -1.6 897,103 + ABIE53_004706 0.33 -0.6 897,104 - ABIE53_004706 0.33 -0.5 897,144 + ABIE53_004706 0.43 -0.2 897,144 + ABIE53_004706 0.43 -1.7 897,145 - ABIE53_004706 0.44 -0.9 897,145 - ABIE53_004706 0.44 -1.0 897,145 - ABIE53_004706 0.44 +0.7 897,145 - ABIE53_004706 0.44 -0.2 897,407 + +1.2 897,407 + +0.4 897,407 + -0.2 897,407 + -2.3 897,407 + +1.2 897,408 - +1.2 897,408 - +1.1 897,472 + -0.6 897,472 + -0.6 897,472 + +0.6 897,718 + -2.3 897,719 - -0.7 897,754 - +1.3 897,757 - -2.0 897,767 + +1.5 897,828 + +1.4 897,856 + +1.2 897,857 - -0.6 898,082 + -0.1 898,082 + -1.2 898,083 - -0.2 898,100 + -0.6 898,101 - +2.1 898,101 - -1.0 898,103 + +3.6 898,103 + +0.0 898,103 + +0.7 898,104 - +0.4 898,221 + ABIE53_004707 0.10 -1.2 898,222 - ABIE53_004707 0.10 +0.1 898,287 + ABIE53_004707 0.15 -0.2 898,287 + ABIE53_004707 0.15 -1.0 898,287 + ABIE53_004707 0.15 +0.4 898,288 - ABIE53_004707 0.15 +0.1 898,368 + ABIE53_004707 0.20 -1.0
Or see this region's nucleotide sequence