Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003571

Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
4,011,130	+		ABIE53_003570	0.36	-0.9
4,011,130	+		ABIE53_003570	0.36	-0.1
4,011,130	+		ABIE53_003570	0.36	+0.6
4,011,131	-		ABIE53_003570	0.36	+0.6
4,011,131	-		ABIE53_003570	0.36	-0.7
4,011,131	-		ABIE53_003570	0.36	-0.4
4,011,210	+		ABIE53_003570	0.42	-0.7
4,011,211	-		ABIE53_003570	0.42	+1.0
4,011,211	-		ABIE53_003570	0.42	-0.8
4,011,211	-		ABIE53_003570	0.42	-1.3
4,011,211	-		ABIE53_003570	0.42	-1.2
4,011,211	-		ABIE53_003570	0.42	-0.8
4,011,211	-		ABIE53_003570	0.42	-4.3
4,011,595	+		ABIE53_003570	0.71	+1.0
4,011,595	+		ABIE53_003570	0.71	-0.2
4,011,595	+		ABIE53_003570	0.71	-1.1
4,011,595	+		ABIE53_003570	0.71	-0.2
4,011,595	+		ABIE53_003570	0.71	+1.6
4,011,595	+		ABIE53_003570	0.71	+1.0
4,011,595	+		ABIE53_003570	0.71	-0.5
4,011,595	+		ABIE53_003570	0.71	-1.6
4,011,595	+		ABIE53_003570	0.71	+3.2
4,011,595	+		ABIE53_003570	0.71	+1.9
4,011,595	+		ABIE53_003570	0.71	+1.3
4,011,595	+		ABIE53_003570	0.71	+0.5
4,011,595	+		ABIE53_003570	0.71	+0.2
4,011,595	+		ABIE53_003570	0.71	-0.0
4,011,595	+		ABIE53_003570	0.71	-0.8
4,011,595	+		ABIE53_003570	0.71	+0.3
4,011,595	+		ABIE53_003570	0.71	-1.4
4,011,596	-		ABIE53_003570	0.71	-0.4
4,011,596	-		ABIE53_003570	0.71	-0.5
4,011,596	-		ABIE53_003570	0.71	-0.4
4,011,596	-		ABIE53_003570	0.71	-1.4
4,011,596	-		ABIE53_003570	0.71	+1.0
4,011,596	-		ABIE53_003570	0.71	-3.4
4,011,596	-		ABIE53_003570	0.71	+0.6
4,011,596	-		ABIE53_003570	0.71	-2.0
4,011,596	-		ABIE53_003570	0.71	-0.4
4,011,597	+		ABIE53_003570	0.71	-0.4
4,011,597	+		ABIE53_003570	0.71	-0.7
4,011,597	+		ABIE53_003570	0.71	+0.4
4,011,597	+		ABIE53_003570	0.71	+1.0
4,011,597	+		ABIE53_003570	0.71	-0.2
4,011,598	-		ABIE53_003570	0.71	-1.1
4,011,598	-		ABIE53_003570	0.71	-0.8
4,011,598	-		ABIE53_003570	0.71	-2.2
4,011,598	-		ABIE53_003570	0.71	-1.4
4,011,598	-		ABIE53_003570	0.71	-0.7
4,011,619	+		ABIE53_003570	0.73	+1.6
4,011,619	+		ABIE53_003570	0.73	+1.3
4,011,620	-		ABIE53_003570	0.73	-2.8
4,011,620	-		ABIE53_003570	0.73	-0.7
4,011,620	-		ABIE53_003570	0.73	-0.2
4,011,620	-		ABIE53_003570	0.73	-1.9
4,011,620	-		ABIE53_003570	0.73	-1.9
4,011,629	+		ABIE53_003570	0.74	-0.5
4,011,629	+		ABIE53_003570	0.74	-1.0
4,011,629	+		ABIE53_003570	0.74	+0.0
4,011,629	+		ABIE53_003570	0.74	+1.1
4,011,629	+		ABIE53_003570	0.74	-1.2
4,011,629	+		ABIE53_003570	0.74	-0.3
4,011,629	+		ABIE53_003570	0.74	+0.1
4,011,629	+		ABIE53_003570	0.74	-0.2
4,011,630	-		ABIE53_003570	0.74	+0.0
4,011,630	-		ABIE53_003570	0.74	-1.3
4,011,630	-		ABIE53_003570	0.74	+0.0
4,011,630	-		ABIE53_003570	0.74	-1.0
4,011,723	+		ABIE53_003570	0.81	+0.7
4,011,723	+		ABIE53_003570	0.81	-0.7
4,011,723	+		ABIE53_003570	0.81	-2.4
4,011,723	+		ABIE53_003570	0.81	-0.0
4,011,723	+		ABIE53_003570	0.81	-1.7
4,011,723	+		ABIE53_003570	0.81	-1.7
4,011,723	+		ABIE53_003570	0.81	-1.5
4,011,723	+		ABIE53_003570	0.81	-1.8
4,011,724	-		ABIE53_003570	0.81	+0.0
4,011,724	-		ABIE53_003570	0.81	-0.4
4,011,724	-		ABIE53_003570	0.81	-4.1
4,011,760	-		ABIE53_003570	0.84	-0.5
4,011,775	+		ABIE53_003570	0.85	+0.0
4,011,850	+				+1.8
4,011,850	+				+0.6
4,011,850	+				-1.1
4,011,850	+				-0.7
4,011,850	+				+1.1
4,011,850	+				+0.0
4,011,850	+				-0.7
4,011,850	+				-1.0
4,011,850	+				+2.2
4,011,850	+				-0.7
4,011,850	+				+1.8
4,011,851	-				+0.3
4,011,851	-				-0.4
4,011,851	-				+0.8
4,011,925	-				+1.0
4,011,956	+				+0.0
4,011,956	+				-0.2
4,011,967	+				-0.5
4,011,967	+				-0.8
4,012,086	+				+0.9
4,012,398	-		ABIE53_003571	0.70	+0.3
4,012,398	-		ABIE53_003571	0.70	+1.0
4,012,398	-		ABIE53_003571	0.70	-1.5
4,012,398	-		ABIE53_003571	0.70	-1.0
4,012,520	+				+1.5
4,012,520	+				+2.6
4,012,520	+				-1.4
4,012,520	+				-0.5
4,012,520	+				-0.3
4,012,520	+				-1.8
4,012,521	-				-0.3
4,012,521	-				+0.0
4,012,547	+				-1.2
4,012,547	+				+0.3
4,012,547	+				-1.5
4,012,560	+				-0.3
4,012,560	+				-0.9
4,012,560	+				-1.0
4,012,560	+				+0.6
4,012,561	-				-1.3
4,012,561	-				+0.6
4,012,561	-				-1.3
4,012,561	-				-1.0
4,012,653	-				-0.4
4,012,690	+				-1.0
4,012,810	-		ABIE53_003572	0.17	-3.0
4,012,878	+		ABIE53_003572	0.25	-2.5
4,012,878	+		ABIE53_003572	0.25	-3.2
4,012,878	+		ABIE53_003572	0.25	-0.4
4,012,878	+		ABIE53_003572	0.25	-1.8
4,012,878	+		ABIE53_003572	0.25	-1.1
4,012,879	-		ABIE53_003572	0.25	-0.5
4,012,879	-		ABIE53_003572	0.25	+1.6
4,012,879	-		ABIE53_003572	0.25	+0.6
4,012,941	+		ABIE53_003572	0.31	-1.5
4,012,941	+		ABIE53_003572	0.31	-0.2
4,012,941	+		ABIE53_003572	0.31	-0.2
4,012,941	+		ABIE53_003572	0.31	-1.1
4,012,941	+		ABIE53_003572	0.31	+2.6
4,012,942	-		ABIE53_003572	0.31	-1.2
4,012,942	-		ABIE53_003572	0.31	-1.6
4,012,942	-		ABIE53_003572	0.31	-3.2
4,013,135	+		ABIE53_003572	0.52	-2.7
4,013,135	+		ABIE53_003572	0.52	+0.6
4,013,135	+		ABIE53_003572	0.52	-3.0
4,013,136	-		ABIE53_003572	0.52	-0.7
4,013,208	+		ABIE53_003572	0.60	-1.2
4,013,208	+		ABIE53_003572	0.60	-3.2
4,013,208	+		ABIE53_003572	0.60	+1.0
4,013,208	+		ABIE53_003572	0.60	+0.0
4,013,208	+		ABIE53_003572	0.60	-1.5
4,013,208	+		ABIE53_003572	0.60	-1.9
4,013,208	+		ABIE53_003572	0.60	-1.6
4,013,208	+		ABIE53_003572	0.60	-1.7
4,013,208	+		ABIE53_003572	0.60	-2.1
4,013,208	+		ABIE53_003572	0.60	+0.3
4,013,208	+		ABIE53_003572	0.60	-1.2
4,013,208	+		ABIE53_003572	0.60	+0.0
4,013,208	+		ABIE53_003572	0.60	-1.6
4,013,208	+		ABIE53_003572	0.60	+0.3
4,013,208	+		ABIE53_003572	0.60	-0.7
4,013,209	-		ABIE53_003572	0.60	-1.8
4,013,209	-		ABIE53_003572	0.60	-2.1
4,013,209	-		ABIE53_003572	0.60	-1.5
4,013,209	-		ABIE53_003572	0.60	-1.0
4,013,209	-		ABIE53_003572	0.60	-1.2
4,013,209	-		ABIE53_003572	0.60	-0.2
4,013,209	-		ABIE53_003572	0.60	-0.4
4,013,209	-		ABIE53_003572	0.60	-2.5
4,013,209	-		ABIE53_003572	0.60	-1.1
4,013,209	-		ABIE53_003572	0.60	-1.1
4,013,212	+		ABIE53_003572	0.60	-5.1
4,013,212	+		ABIE53_003572	0.60	-3.5
4,013,212	+		ABIE53_003572	0.60	+0.0
4,013,212	+		ABIE53_003572	0.60	-3.1
4,013,212	+		ABIE53_003572	0.60	-2.9
4,013,212	+		ABIE53_003572	0.60	-0.5
4,013,212	+		ABIE53_003572	0.60	-2.3
4,013,212	+		ABIE53_003572	0.60	-1.5
4,013,212	+		ABIE53_003572	0.60	-1.9
4,013,212	+		ABIE53_003572	0.60	-1.0
4,013,212	+		ABIE53_003572	0.60	-0.2
4,013,212	+		ABIE53_003572	0.60	-0.2
4,013,212	+		ABIE53_003572	0.60	-1.0
4,013,212	+		ABIE53_003572	0.60	-2.1
4,013,212	+		ABIE53_003572	0.60	-2.8
4,013,212	+		ABIE53_003572	0.60	-0.7
4,013,212	+		ABIE53_003572	0.60	-0.7
4,013,212	-		ABIE53_003572	0.60	-1.8
4,013,213	-		ABIE53_003572	0.60	+0.6
4,013,213	-		ABIE53_003572	0.60	-1.1
4,013,213	-		ABIE53_003572	0.60	-1.7
4,013,213	-		ABIE53_003572	0.60	-2.4
4,013,213	-		ABIE53_003572	0.60	+0.6
4,013,213	-		ABIE53_003572	0.60	-0.7
4,013,213	-		ABIE53_003572	0.60	-4.5
4,013,213	-		ABIE53_003572	0.60	-0.2
4,013,213	-		ABIE53_003572	0.60	+0.0
4,013,213	-		ABIE53_003572	0.60	+0.6
4,013,213	-		ABIE53_003572	0.60	-1.9
4,013,226	+		ABIE53_003572	0.62	+1.0
4,013,427	+		ABIE53_003572	0.83	-0.8
4,013,427	+		ABIE53_003572	0.83	-2.0
4,013,428	-		ABIE53_003572	0.83	-1.5
4,013,521	-				+0.6