Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_001650 and ABIE53_001651 are separated by 251 nucleotides ABIE53_001651 and ABIE53_001652 are separated by 86 nucleotides ABIE53_001652 and ABIE53_001653 are separated by 213 nucleotides
ABIE53_001650: ABIE53_001650 - hemin uptake protein HemP, at 1,839,851 to 1,840,114
_001650
ABIE53_001651: ABIE53_001651 - hypothetical protein, at 1,840,366 to 1,840,848
_001651
ABIE53_001652: ABIE53_001652 - putative redox protein, at 1,840,935 to 1,841,333
_001652
ABIE53_001653: ABIE53_001653 - redox-sensitive bicupin YhaK (pirin superfamily), at 1,841,547 to 1,842,425
_001653
Position (kb) 1840
1841
1842 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1840.106 kb on - strand at 1840.158 kb on + strand at 1840.228 kb on + strand at 1840.228 kb on + strand at 1840.228 kb on + strand at 1840.229 kb on - strand at 1840.229 kb on - strand at 1840.229 kb on - strand at 1840.299 kb on + strand at 1840.300 kb on - strand at 1840.300 kb on - strand at 1840.357 kb on + strand at 1840.531 kb on + strand, within ABIE53_001651 at 1840.531 kb on + strand, within ABIE53_001651 at 1840.531 kb on + strand, within ABIE53_001651 at 1840.531 kb on + strand, within ABIE53_001651 at 1840.532 kb on - strand, within ABIE53_001651 at 1840.532 kb on - strand, within ABIE53_001651 at 1840.532 kb on - strand, within ABIE53_001651 at 1840.532 kb on - strand, within ABIE53_001651 at 1840.532 kb on - strand, within ABIE53_001651 at 1840.532 kb on - strand, within ABIE53_001651 at 1840.583 kb on + strand, within ABIE53_001651 at 1840.583 kb on + strand, within ABIE53_001651 at 1840.584 kb on - strand, within ABIE53_001651 at 1840.584 kb on - strand, within ABIE53_001651 at 1840.607 kb on + strand, within ABIE53_001651 at 1840.607 kb on + strand, within ABIE53_001651 at 1840.607 kb on + strand, within ABIE53_001651 at 1840.608 kb on - strand, within ABIE53_001651 at 1840.831 kb on - strand at 1840.862 kb on + strand at 1840.862 kb on + strand at 1840.862 kb on + strand at 1840.862 kb on + strand at 1840.862 kb on + strand at 1840.863 kb on - strand at 1840.863 kb on - strand at 1840.863 kb on - strand at 1840.863 kb on - strand at 1840.863 kb on - strand at 1840.892 kb on - strand at 1840.892 kb on - strand at 1840.892 kb on - strand at 1841.150 kb on - strand, within ABIE53_001652 at 1841.150 kb on - strand, within ABIE53_001652 at 1841.290 kb on + strand, within ABIE53_001652 at 1841.290 kb on + strand, within ABIE53_001652 at 1841.290 kb on + strand, within ABIE53_001652 at 1841.291 kb on - strand, within ABIE53_001652 at 1841.291 kb on - strand, within ABIE53_001652 at 1841.291 kb on - strand, within ABIE53_001652 at 1841.291 kb on - strand, within ABIE53_001652 at 1841.343 kb on + strand at 1841.343 kb on + strand at 1841.343 kb on + strand at 1841.343 kb on + strand at 1841.344 kb on - strand at 1841.344 kb on - strand at 1841.344 kb on - strand at 1841.344 kb on - strand at 1841.378 kb on + strand at 1841.378 kb on + strand at 1841.378 kb on + strand at 1841.378 kb on + strand at 1841.378 kb on + strand at 1841.378 kb on + strand at 1841.378 kb on + strand at 1841.378 kb on + strand at 1841.379 kb on - strand at 1841.379 kb on - strand at 1841.379 kb on - strand at 1841.379 kb on - strand at 1841.422 kb on + strand at 1841.472 kb on + strand at 1841.472 kb on + strand at 1841.472 kb on + strand at 1841.472 kb on + strand at 1841.473 kb on - strand at 1841.473 kb on - strand at 1841.473 kb on - strand at 1841.473 kb on - strand at 1841.492 kb on + strand at 1841.493 kb on - strand at 1841.493 kb on - strand at 1841.582 kb on - strand at 1841.582 kb on - strand at 1841.582 kb on - strand at 1841.582 kb on - strand at 1841.635 kb on + strand, within ABIE53_001653 at 1841.635 kb on + strand, within ABIE53_001653 at 1841.679 kb on + strand, within ABIE53_001653 at 1841.679 kb on + strand, within ABIE53_001653 at 1841.679 kb on + strand, within ABIE53_001653 at 1841.679 kb on + strand, within ABIE53_001653 at 1841.679 kb on + strand, within ABIE53_001653 at 1841.679 kb on + strand, within ABIE53_001653 at 1841.679 kb on + strand, within ABIE53_001653 at 1841.680 kb on - strand, within ABIE53_001653 at 1841.680 kb on - strand, within ABIE53_001653 at 1841.680 kb on - strand, within ABIE53_001653 at 1841.680 kb on - strand, within ABIE53_001653 at 1841.680 kb on - strand, within ABIE53_001653 at 1841.733 kb on - strand, within ABIE53_001653 at 1841.785 kb on + strand, within ABIE53_001653 at 1841.785 kb on + strand, within ABIE53_001653 at 1841.786 kb on - strand, within ABIE53_001653 at 1841.810 kb on - strand, within ABIE53_001653 at 1841.824 kb on + strand, within ABIE53_001653 at 1841.824 kb on + strand, within ABIE53_001653 at 1841.881 kb on + strand, within ABIE53_001653 at 1841.881 kb on + strand, within ABIE53_001653 at 1841.881 kb on + strand, within ABIE53_001653 at 1842.007 kb on + strand, within ABIE53_001653 at 1842.080 kb on + strand, within ABIE53_001653 at 1842.214 kb on + strand, within ABIE53_001653 at 1842.214 kb on + strand, within ABIE53_001653 at 1842.214 kb on + strand, within ABIE53_001653 at 1842.214 kb on + strand, within ABIE53_001653 at 1842.214 kb on + strand, within ABIE53_001653 at 1842.214 kb on + strand, within ABIE53_001653 at 1842.214 kb on + strand, within ABIE53_001653 at 1842.214 kb on + strand, within ABIE53_001653 at 1842.214 kb on + strand, within ABIE53_001653 at 1842.214 kb on + strand, within ABIE53_001653 at 1842.214 kb on + strand, within ABIE53_001653 at 1842.214 kb on + strand, within ABIE53_001653 at 1842.214 kb on + strand, within ABIE53_001653 at 1842.214 kb on + strand, within ABIE53_001653 at 1842.214 kb on + strand, within ABIE53_001653 at 1842.214 kb on + strand, within ABIE53_001653 at 1842.214 kb on + strand, within ABIE53_001653 at 1842.214 kb on + strand, within ABIE53_001653 at 1842.214 kb on + strand, within ABIE53_001653 at 1842.214 kb on + strand, within ABIE53_001653 at 1842.214 kb on + strand, within ABIE53_001653 at 1842.214 kb on + strand, within ABIE53_001653 at 1842.214 kb on + strand, within ABIE53_001653 at 1842.214 kb on + strand, within ABIE53_001653 at 1842.214 kb on + strand, within ABIE53_001653 at 1842.214 kb on + strand, within ABIE53_001653 at 1842.215 kb on - strand, within ABIE53_001653 at 1842.215 kb on - strand, within ABIE53_001653 at 1842.215 kb on - strand, within ABIE53_001653 at 1842.215 kb on - strand, within ABIE53_001653 at 1842.215 kb on - strand, within ABIE53_001653 at 1842.215 kb on - strand, within ABIE53_001653 at 1842.215 kb on - strand, within ABIE53_001653 at 1842.215 kb on - strand, within ABIE53_001653 at 1842.215 kb on - strand, within ABIE53_001653 at 1842.215 kb on - strand, within ABIE53_001653 at 1842.215 kb on - strand, within ABIE53_001653 at 1842.215 kb on - strand, within ABIE53_001653 at 1842.215 kb on - strand, within ABIE53_001653 at 1842.215 kb on - strand, within ABIE53_001653 at 1842.215 kb on - strand, within ABIE53_001653 at 1842.215 kb on - strand, within ABIE53_001653 at 1842.215 kb on - strand, within ABIE53_001653 at 1842.215 kb on - strand, within ABIE53_001653
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 1,840,106 - +0.3 1,840,158 + -1.3 1,840,228 + -0.4 1,840,228 + +3.1 1,840,228 + -1.7 1,840,229 - -0.5 1,840,229 - -1.8 1,840,229 - -0.5 1,840,299 + -0.9 1,840,300 - +1.3 1,840,300 - -0.9 1,840,357 + +0.3 1,840,531 + ABIE53_001651 0.34 -0.9 1,840,531 + ABIE53_001651 0.34 -0.9 1,840,531 + ABIE53_001651 0.34 -1.4 1,840,531 + ABIE53_001651 0.34 -1.2 1,840,532 - ABIE53_001651 0.34 -2.1 1,840,532 - ABIE53_001651 0.34 -1.6 1,840,532 - ABIE53_001651 0.34 +3.0 1,840,532 - ABIE53_001651 0.34 +0.7 1,840,532 - ABIE53_001651 0.34 -1.6 1,840,532 - ABIE53_001651 0.34 -0.7 1,840,583 + ABIE53_001651 0.45 -1.0 1,840,583 + ABIE53_001651 0.45 +1.0 1,840,584 - ABIE53_001651 0.45 +0.5 1,840,584 - ABIE53_001651 0.45 +1.1 1,840,607 + ABIE53_001651 0.50 -0.5 1,840,607 + ABIE53_001651 0.50 +0.2 1,840,607 + ABIE53_001651 0.50 -0.6 1,840,608 - ABIE53_001651 0.50 -2.0 1,840,831 - -0.7 1,840,862 + +1.3 1,840,862 + -1.1 1,840,862 + -1.6 1,840,862 + +2.3 1,840,862 + -0.5 1,840,863 - -0.9 1,840,863 - -2.1 1,840,863 - +0.0 1,840,863 - -1.9 1,840,863 - +1.7 1,840,892 - +0.3 1,840,892 - +0.1 1,840,892 - -0.0 1,841,150 - ABIE53_001652 0.54 -0.5 1,841,150 - ABIE53_001652 0.54 -0.7 1,841,290 + ABIE53_001652 0.89 -0.5 1,841,290 + ABIE53_001652 0.89 -2.0 1,841,290 + ABIE53_001652 0.89 +0.3 1,841,291 - ABIE53_001652 0.89 +0.3 1,841,291 - ABIE53_001652 0.89 +2.3 1,841,291 - ABIE53_001652 0.89 -1.2 1,841,291 - ABIE53_001652 0.89 -0.6 1,841,343 + -1.4 1,841,343 + -1.0 1,841,343 + -1.4 1,841,343 + +0.7 1,841,344 - -0.4 1,841,344 - -2.5 1,841,344 - +0.5 1,841,344 - -0.3 1,841,378 + -2.7 1,841,378 + -3.5 1,841,378 + -1.3 1,841,378 + +0.5 1,841,378 + -0.9 1,841,378 + -1.3 1,841,378 + -0.9 1,841,378 + +0.4 1,841,379 - -0.9 1,841,379 - -2.4 1,841,379 - -1.0 1,841,379 - +0.5 1,841,422 + -1.3 1,841,472 + +0.9 1,841,472 + -0.7 1,841,472 + +0.8 1,841,472 + -1.3 1,841,473 - -0.7 1,841,473 - +1.4 1,841,473 - -0.6 1,841,473 - -0.8 1,841,492 + +0.1 1,841,493 - +0.7 1,841,493 - -0.4 1,841,582 - -1.7 1,841,582 - -0.3 1,841,582 - -2.0 1,841,582 - +0.0 1,841,635 + ABIE53_001653 0.10 -1.8 1,841,635 + ABIE53_001653 0.10 +2.1 1,841,679 + ABIE53_001653 0.15 +0.4 1,841,679 + ABIE53_001653 0.15 -1.6 1,841,679 + ABIE53_001653 0.15 -0.4 1,841,679 + ABIE53_001653 0.15 -0.3 1,841,679 + ABIE53_001653 0.15 +2.3 1,841,679 + ABIE53_001653 0.15 -0.3 1,841,679 + ABIE53_001653 0.15 +1.0 1,841,680 - ABIE53_001653 0.15 -1.5 1,841,680 - ABIE53_001653 0.15 -0.3 1,841,680 - ABIE53_001653 0.15 +1.3 1,841,680 - ABIE53_001653 0.15 -0.6 1,841,680 - ABIE53_001653 0.15 -0.9 1,841,733 - ABIE53_001653 0.21 -0.3 1,841,785 + ABIE53_001653 0.27 -0.0 1,841,785 + ABIE53_001653 0.27 +0.3 1,841,786 - ABIE53_001653 0.27 +2.3 1,841,810 - ABIE53_001653 0.30 -1.0 1,841,824 + ABIE53_001653 0.32 +0.3 1,841,824 + ABIE53_001653 0.32 -0.0 1,841,881 + ABIE53_001653 0.38 -1.2 1,841,881 + ABIE53_001653 0.38 +0.7 1,841,881 + ABIE53_001653 0.38 -0.5 1,842,007 + ABIE53_001653 0.52 -0.1 1,842,080 + ABIE53_001653 0.61 +1.5 1,842,214 + ABIE53_001653 0.76 +0.6 1,842,214 + ABIE53_001653 0.76 -0.2 1,842,214 + ABIE53_001653 0.76 +1.5 1,842,214 + ABIE53_001653 0.76 +0.7 1,842,214 + ABIE53_001653 0.76 +0.6 1,842,214 + ABIE53_001653 0.76 +1.5 1,842,214 + ABIE53_001653 0.76 +2.6 1,842,214 + ABIE53_001653 0.76 -1.0 1,842,214 + ABIE53_001653 0.76 +2.3 1,842,214 + ABIE53_001653 0.76 +1.7 1,842,214 + ABIE53_001653 0.76 +0.3 1,842,214 + ABIE53_001653 0.76 +0.3 1,842,214 + ABIE53_001653 0.76 +3.9 1,842,214 + ABIE53_001653 0.76 -0.2 1,842,214 + ABIE53_001653 0.76 +0.5 1,842,214 + ABIE53_001653 0.76 +1.9 1,842,214 + ABIE53_001653 0.76 +0.3 1,842,214 + ABIE53_001653 0.76 -0.1 1,842,214 + ABIE53_001653 0.76 -0.2 1,842,214 + ABIE53_001653 0.76 +1.0 1,842,214 + ABIE53_001653 0.76 +0.7 1,842,214 + ABIE53_001653 0.76 +1.3 1,842,214 + ABIE53_001653 0.76 +3.0 1,842,214 + ABIE53_001653 0.76 -2.7 1,842,214 + ABIE53_001653 0.76 +0.8 1,842,214 + ABIE53_001653 0.76 -0.2 1,842,215 - ABIE53_001653 0.76 -0.7 1,842,215 - ABIE53_001653 0.76 -1.7 1,842,215 - ABIE53_001653 0.76 -0.4 1,842,215 - ABIE53_001653 0.76 -0.5 1,842,215 - ABIE53_001653 0.76 -0.5 1,842,215 - ABIE53_001653 0.76 -1.0 1,842,215 - ABIE53_001653 0.76 -0.7 1,842,215 - ABIE53_001653 0.76 -1.9 1,842,215 - ABIE53_001653 0.76 +2.3 1,842,215 - ABIE53_001653 0.76 +1.3 1,842,215 - ABIE53_001653 0.76 -0.9 1,842,215 - ABIE53_001653 0.76 -0.8 1,842,215 - ABIE53_001653 0.76 +0.6 1,842,215 - ABIE53_001653 0.76 +1.3 1,842,215 - ABIE53_001653 0.76 -0.5 1,842,215 - ABIE53_001653 0.76 -0.2 1,842,215 - ABIE53_001653 0.76 +2.3 1,842,215 - ABIE53_001653 0.76 -0.7
Or see this region's nucleotide sequence