Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001563

Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
1,740,507	+		ABIE53_001561	0.53	-1.2
1,740,507	+		ABIE53_001561	0.53	+0.2
1,740,507	+		ABIE53_001561	0.53	-0.0
1,740,508	-		ABIE53_001561	0.53	-1.2
1,740,508	-		ABIE53_001561	0.53	-0.7
1,740,508	-		ABIE53_001561	0.53	-0.3
1,740,508	-		ABIE53_001561	0.53	-0.3
1,740,508	-		ABIE53_001561	0.53	-1.5
1,740,508	-		ABIE53_001561	0.53	-1.0
1,740,508	-		ABIE53_001561	0.53	-1.5
1,740,749	-				-1.5
1,741,111	+		ABIE53_001562	0.61	-1.4
1,741,111	+		ABIE53_001562	0.61	+0.7
1,741,170	+		ABIE53_001562	0.70	-0.3
1,741,170	+		ABIE53_001562	0.70	+3.9
1,741,204	+		ABIE53_001562	0.75	+0.3
1,741,204	+		ABIE53_001562	0.75	+0.7
1,741,204	+		ABIE53_001562	0.75	-0.3
1,741,204	+		ABIE53_001562	0.75	-1.9
1,741,205	-		ABIE53_001562	0.75	-1.0
1,741,205	-		ABIE53_001562	0.75	-0.1
1,741,207	+		ABIE53_001562	0.75	-1.3
1,741,208	-		ABIE53_001562	0.75	-0.3
1,741,500	+				+0.3
1,741,612	+				+1.3
1,741,612	+				+1.3
1,741,613	-				-0.3
1,741,613	-				-1.9
1,741,613	-				+0.9
1,741,613	-				+1.6
1,741,613	-				+0.3
1,741,615	+				-1.9
1,741,616	-				+0.3
1,741,616	-				+1.5
1,741,724	-		ABIE53_001563	0.14	+1.4
1,741,724	-		ABIE53_001563	0.14	-0.7
1,741,828	+		ABIE53_001563	0.19	-0.9
1,741,828	+		ABIE53_001563	0.19	+3.3
1,741,828	+		ABIE53_001563	0.19	-0.7
1,741,829	-		ABIE53_001563	0.19	-0.0
1,741,829	-		ABIE53_001563	0.19	+1.9
1,741,829	-		ABIE53_001563	0.19	+0.4
1,741,872	+		ABIE53_001563	0.21	-0.0
1,741,872	+		ABIE53_001563	0.21	-1.2
1,741,873	-		ABIE53_001563	0.21	-1.6
1,742,122	+		ABIE53_001563	0.33	-0.1
1,742,122	+		ABIE53_001563	0.33	+0.8
1,742,122	+		ABIE53_001563	0.33	-0.1
1,742,122	+		ABIE53_001563	0.33	+0.8
1,742,122	+		ABIE53_001563	0.33	-0.6
1,742,122	+		ABIE53_001563	0.33	-0.3
1,742,122	+		ABIE53_001563	0.33	+0.9
1,742,122	+		ABIE53_001563	0.33	-0.6
1,742,122	+		ABIE53_001563	0.33	-1.2
1,742,122	+		ABIE53_001563	0.33	-0.7
1,742,123	-		ABIE53_001563	0.33	-0.7
1,742,123	-		ABIE53_001563	0.33	+2.3
1,742,274	+		ABIE53_001563	0.39	-0.4
1,742,274	+		ABIE53_001563	0.39	-0.9
1,742,275	-		ABIE53_001563	0.40	-0.1
1,742,275	-		ABIE53_001563	0.40	-0.7
1,742,360	+		ABIE53_001563	0.43	+2.3
1,742,361	-		ABIE53_001563	0.43	+1.0
1,742,401	+		ABIE53_001563	0.45	-1.0
1,742,401	+		ABIE53_001563	0.45	-0.6
1,742,402	-		ABIE53_001563	0.45	-0.6
1,742,402	-		ABIE53_001563	0.45	-1.4
1,742,402	-		ABIE53_001563	0.45	-1.4
1,742,402	-		ABIE53_001563	0.45	+0.3
1,742,662	+		ABIE53_001563	0.57	-0.4
1,742,860	+		ABIE53_001563	0.66	+1.1
1,742,860	+		ABIE53_001563	0.66	-0.3
1,742,861	-		ABIE53_001563	0.66	+0.3
1,742,861	-		ABIE53_001563	0.66	-0.0
1,742,861	-		ABIE53_001563	0.66	-1.4
1,742,861	-		ABIE53_001563	0.66	-0.5
1,742,863	+		ABIE53_001563	0.66	-0.0
1,742,864	-		ABIE53_001563	0.66	-0.5
1,742,864	-		ABIE53_001563	0.66	+1.3
1,742,864	-		ABIE53_001563	0.66	-1.2
1,742,966	-		ABIE53_001563	0.71	-1.3
1,742,966	-		ABIE53_001563	0.71	+0.1
1,743,058	+		ABIE53_001563	0.75	-0.1
1,743,058	+		ABIE53_001563	0.75	-1.0
1,743,058	+		ABIE53_001563	0.75	+0.6
1,743,058	+		ABIE53_001563	0.75	-0.0
1,743,059	-		ABIE53_001563	0.75	-2.3
1,743,059	-		ABIE53_001563	0.75	-0.0
1,743,059	-		ABIE53_001563	0.75	-1.0
1,743,059	-		ABIE53_001563	0.75	+1.7
1,743,139	+		ABIE53_001563	0.79	-0.5
1,743,139	+		ABIE53_001563	0.79	+0.7
1,743,139	+		ABIE53_001563	0.79	-0.4
1,743,139	+		ABIE53_001563	0.79	-0.1
1,743,140	-		ABIE53_001563	0.79	+2.3
1,743,140	-		ABIE53_001563	0.79	-2.0
1,743,140	-		ABIE53_001563	0.79	-0.8
1,743,140	-		ABIE53_001563	0.79	-1.0
1,743,140	-		ABIE53_001563	0.79	+1.8
1,743,333	-		ABIE53_001563	0.88	+0.6
1,743,692	+				-0.5
1,743,693	-				-0.6
1,743,693	-				+1.3
1,743,704	-				+2.7
1,743,706	+				-0.2
1,743,716	+				-0.1
1,743,716	+				+2.3
1,743,717	-				-0.9
1,743,717	-				+2.3
1,743,717	-				-0.2
1,743,768	+				+0.6
1,743,769	-				+1.3
1,743,769	-				+0.7
1,743,769	-				+1.3
1,743,770	+				-0.2
1,743,770	+				+0.7
1,743,771	-				-0.6
1,743,771	-				-0.1
1,743,798	+				+1.0
1,743,798	+				+0.3
1,743,798	+				+1.3
1,743,798	+				-0.2
1,743,798	+				-1.2
1,743,798	+				+0.9
1,743,799	-				-1.4
1,743,799	-				-0.7
1,743,802	+				-3.4
1,743,802	+				-0.5
1,743,802	+				-1.2
1,743,802	+				-0.3
1,743,803	-				-1.0
1,743,803	-				-0.7
1,743,803	-				+1.6
1,743,803	-				-1.0
1,743,917	+				-1.1
1,743,917	+				-1.4
1,743,917	+				-1.9
1,743,917	+				+1.3
1,743,918	-				+1.0
1,743,918	-				+1.3
1,744,061	+				-1.2
1,744,100	+				-0.5
1,744,100	+				-1.7
1,744,100	+				-1.6
1,744,100	+				-0.9
1,744,100	+				-0.3
1,744,100	+				-0.0
1,744,101	-				-2.0
1,744,101	-				-0.9
1,744,101	-				-0.9
1,744,101	-				-1.5
1,744,101	-				+1.1
1,744,101	-				+0.6
1,744,101	-				+0.9
1,744,312	-		ABIE53_001564	0.34	+0.8
1,744,338	-		ABIE53_001564	0.37	+1.3
1,744,346	+		ABIE53_001564	0.38	-1.7
1,744,346	+		ABIE53_001564	0.38	+0.3
1,744,347	-		ABIE53_001564	0.38	-2.3
1,744,347	-		ABIE53_001564	0.38	+0.7
1,744,347	-		ABIE53_001564	0.38	-1.0
1,744,347	-		ABIE53_001564	0.38	-0.4
1,744,347	-		ABIE53_001564	0.38	-0.7
1,744,457	+		ABIE53_001564	0.53	+0.3
1,744,457	+		ABIE53_001564	0.53	+0.2
1,744,457	+		ABIE53_001564	0.53	+1.7
1,744,458	-		ABIE53_001564	0.53	-0.4