Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000728

Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000727 and ABIE53_000728 are separated by 95 nucleotidesABIE53_000728 and ABIE53_000729 are separated by 180 nucleotides ABIE53_000727: ABIE53_000727 - 8-oxo-dGTP pyrophosphatase MutT (NUDIX family), at 780,538 to 781,389 _000727 ABIE53_000728: ABIE53_000728 - formyltetrahydrofolate deformylase, at 781,485 to 782,354 _000728 ABIE53_000729: ABIE53_000729 - putative iron-regulated membrane protein, at 782,535 to 783,818 _000729 Position (kb) 781 782 783Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 780.641 kb on + strand, within ABIE53_000727at 780.641 kb on + strand, within ABIE53_000727at 780.641 kb on + strand, within ABIE53_000727at 780.642 kb on - strand, within ABIE53_000727at 780.642 kb on - strand, within ABIE53_000727at 780.642 kb on - strand, within ABIE53_000727at 780.802 kb on + strand, within ABIE53_000727at 780.802 kb on + strand, within ABIE53_000727at 780.802 kb on + strand, within ABIE53_000727at 780.802 kb on + strand, within ABIE53_000727at 780.803 kb on - strand, within ABIE53_000727at 780.803 kb on - strand, within ABIE53_000727at 780.842 kb on - strand, within ABIE53_000727at 780.842 kb on - strand, within ABIE53_000727at 780.842 kb on - strand, within ABIE53_000727at 780.842 kb on - strand, within ABIE53_000727at 780.842 kb on - strand, within ABIE53_000727at 780.883 kb on + strand, within ABIE53_000727at 780.884 kb on - strand, within ABIE53_000727at 780.884 kb on - strand, within ABIE53_000727at 780.908 kb on + strand, within ABIE53_000727at 780.908 kb on + strand, within ABIE53_000727at 780.909 kb on - strand, within ABIE53_000727at 780.913 kb on + strand, within ABIE53_000727at 780.914 kb on - strand, within ABIE53_000727at 780.914 kb on - strand, within ABIE53_000727at 780.914 kb on - strand, within ABIE53_000727at 780.914 kb on - strand, within ABIE53_000727at 781.114 kb on + strand, within ABIE53_000727at 781.114 kb on + strand, within ABIE53_000727at 781.114 kb on + strand, within ABIE53_000727at 781.114 kb on + strand, within ABIE53_000727at 781.114 kb on + strand, within ABIE53_000727at 781.114 kb on + strand, within ABIE53_000727at 781.114 kb on + strand, within ABIE53_000727at 781.115 kb on - strand, within ABIE53_000727at 781.115 kb on - strand, within ABIE53_000727at 781.115 kb on - strand, within ABIE53_000727at 781.115 kb on - strand, within ABIE53_000727at 781.115 kb on - strand, within ABIE53_000727at 781.165 kb on + strand, within ABIE53_000727at 781.166 kb on - strand, within ABIE53_000727at 781.166 kb on - strand, within ABIE53_000727at 781.166 kb on - strand, within ABIE53_000727at 781.166 kb on - strand, within ABIE53_000727at 781.166 kb on - strand, within ABIE53_000727at 781.166 kb on - strand, within ABIE53_000727at 781.166 kb on - strand, within ABIE53_000727at 781.166 kb on - strand, within ABIE53_000727at 781.200 kb on + strand, within ABIE53_000727at 781.200 kb on + strand, within ABIE53_000727at 781.201 kb on - strand, within ABIE53_000727at 781.355 kb on + strandat 781.355 kb on + strandat 781.355 kb on + strandat 781.355 kb on + strandat 781.355 kb on + strandat 781.356 kb on - strandat 781.368 kb on + strandat 781.379 kb on + strandat 781.380 kb on - strandat 781.380 kb on - strandat 781.404 kb on - strandat 781.404 kb on - strandat 781.404 kb on - strandat 781.404 kb on - strandat 781.404 kb on - strandat 781.425 kb on + strandat 781.442 kb on - strandat 781.442 kb on - strandat 781.442 kb on - strandat 781.442 kb on - strandat 781.442 kb on - strandat 781.505 kb on + strandat 781.506 kb on - strandat 781.506 kb on - strandat 781.583 kb on + strand, within ABIE53_000728at 781.583 kb on + strand, within ABIE53_000728at 781.583 kb on + strand, within ABIE53_000728at 781.584 kb on - strand, within ABIE53_000728at 781.584 kb on - strand, within ABIE53_000728at 781.584 kb on - strand, within ABIE53_000728at 781.718 kb on + strand, within ABIE53_000728at 781.718 kb on + strand, within ABIE53_000728at 781.765 kb on + strand, within ABIE53_000728at 781.765 kb on + strand, within ABIE53_000728at 781.765 kb on + strand, within ABIE53_000728at 781.872 kb on + strand, within ABIE53_000728at 781.872 kb on + strand, within ABIE53_000728at 781.872 kb on + strand, within ABIE53_000728at 781.873 kb on - strand, within ABIE53_000728at 781.873 kb on - strand, within ABIE53_000728at 781.873 kb on - strand, within ABIE53_000728at 781.873 kb on - strand, within ABIE53_000728at 781.873 kb on - strand, within ABIE53_000728at 781.873 kb on - strand, within ABIE53_000728at 781.890 kb on + strand, within ABIE53_000728at 781.890 kb on + strand, within ABIE53_000728at 781.890 kb on + strand, within ABIE53_000728at 781.890 kb on + strand, within ABIE53_000728at 781.890 kb on + strand, within ABIE53_000728at 781.891 kb on - strand, within ABIE53_000728at 781.891 kb on - strand, within ABIE53_000728at 781.891 kb on - strand, within ABIE53_000728at 781.891 kb on - strand, within ABIE53_000728at 781.891 kb on - strand, within ABIE53_000728at 782.013 kb on + strand, within ABIE53_000728at 782.013 kb on + strand, within ABIE53_000728at 782.013 kb on + strand, within ABIE53_000728at 782.014 kb on - strand, within ABIE53_000728at 782.014 kb on - strand, within ABIE53_000728at 782.014 kb on - strand, within ABIE53_000728at 782.112 kb on + strand, within ABIE53_000728at 782.112 kb on + strand, within ABIE53_000728at 782.113 kb on - strand, within ABIE53_000728at 782.113 kb on - strand, within ABIE53_000728at 782.113 kb on - strand, within ABIE53_000728at 782.115 kb on + strand, within ABIE53_000728at 782.115 kb on + strand, within ABIE53_000728at 782.115 kb on + strand, within ABIE53_000728at 782.115 kb on + strand, within ABIE53_000728at 782.116 kb on - strand, within ABIE53_000728at 782.116 kb on - strand, within ABIE53_000728at 782.163 kb on + strand, within ABIE53_000728at 782.163 kb on + strand, within ABIE53_000728at 782.163 kb on + strand, within ABIE53_000728at 782.164 kb on - strand, within ABIE53_000728at 782.164 kb on - strand, within ABIE53_000728at 782.164 kb on - strand, within ABIE53_000728at 782.333 kb on + strandat 782.333 kb on + strandat 782.334 kb on - strandat 782.334 kb on - strandat 782.334 kb on - strandat 782.353 kb on - strandat 782.418 kb on + strandat 782.419 kb on - strandat 782.419 kb on - strandat 782.419 kb on - strandat 782.454 kb on + strandat 782.455 kb on - strandat 782.465 kb on + strandat 782.536 kb on + strandat 782.537 kb on - strandat 782.640 kb on + strandat 782.729 kb on + strand, within ABIE53_000729at 782.730 kb on - strand, within ABIE53_000729at 782.737 kb on - strand, within ABIE53_000729at 782.759 kb on + strand, within ABIE53_000729at 782.759 kb on + strand, within ABIE53_000729at 782.759 kb on + strand, within ABIE53_000729at 782.760 kb on - strand, within ABIE53_000729at 782.863 kb on + strand, within ABIE53_000729at 782.863 kb on + strand, within ABIE53_000729at 782.863 kb on + strand, within ABIE53_000729at 782.863 kb on + strand, within ABIE53_000729at 782.864 kb on - strand, within ABIE53_000729at 782.864 kb on - strand, within ABIE53_000729at 782.864 kb on - strand, within ABIE53_000729at 782.864 kb on - strand, within ABIE53_000729at 782.914 kb on + strand, within ABIE53_000729at 782.914 kb on + strand, within ABIE53_000729at 782.915 kb on - strand, within ABIE53_000729at 782.915 kb on - strand, within ABIE53_000729at 782.915 kb on - strand, within ABIE53_000729at 782.915 kb on - strand, within ABIE53_000729at 782.929 kb on + strand, within ABIE53_000729at 782.929 kb on + strand, within ABIE53_000729at 782.930 kb on - strand, within ABIE53_000729at 782.950 kb on + strand, within ABIE53_000729at 782.950 kb on + strand, within ABIE53_000729at 782.951 kb on - strand, within ABIE53_000729at 782.951 kb on - strand, within ABIE53_000729at 782.951 kb on - strand, within ABIE53_000729at 782.953 kb on + strand, within ABIE53_000729at 782.953 kb on + strand, within ABIE53_000729at 782.953 kb on + strand, within ABIE53_000729at 782.953 kb on + strand, within ABIE53_000729at 782.953 kb on + strand, within ABIE53_000729at 782.953 kb on + strand, within ABIE53_000729at 782.953 kb on + strand, within ABIE53_000729at 782.953 kb on + strand, within ABIE53_000729at 782.953 kb on + strand, within ABIE53_000729at 782.953 kb on + strand, within ABIE53_000729at 782.954 kb on - strand, within ABIE53_000729at 782.954 kb on - strand, within ABIE53_000729at 782.954 kb on - strand, within ABIE53_000729at 782.954 kb on - strand, within ABIE53_000729at 782.954 kb on - strand, within ABIE53_000729at 782.954 kb on - strand, within ABIE53_000729at 782.954 kb on - strand, within ABIE53_000729at 782.954 kb on - strand, within ABIE53_000729at 782.954 kb on - strand, within ABIE53_000729at 782.954 kb on - strand, within ABIE53_000729at 782.954 kb on - strand, within ABIE53_000729at 782.954 kb on - strand, within ABIE53_000729at 782.954 kb on - strand, within ABIE53_000729at 783.229 kb on + strand, within ABIE53_000729

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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780,641 + ABIE53_000727 0.12 -0.5
780,641 + ABIE53_000727 0.12 +0.6
780,641 + ABIE53_000727 0.12 +0.0
780,642 - ABIE53_000727 0.12 -1.6
780,642 - ABIE53_000727 0.12 -0.8
780,642 - ABIE53_000727 0.12 -1.4
780,802 + ABIE53_000727 0.31 +0.3
780,802 + ABIE53_000727 0.31 +0.0
780,802 + ABIE53_000727 0.31 -0.6
780,802 + ABIE53_000727 0.31 +2.1
780,803 - ABIE53_000727 0.31 +1.0
780,803 - ABIE53_000727 0.31 -0.4
780,842 - ABIE53_000727 0.36 +1.3
780,842 - ABIE53_000727 0.36 -0.5
780,842 - ABIE53_000727 0.36 -1.7
780,842 - ABIE53_000727 0.36 -0.8
780,842 - ABIE53_000727 0.36 -0.9
780,883 + ABIE53_000727 0.40 -1.1
780,884 - ABIE53_000727 0.41 -0.5
780,884 - ABIE53_000727 0.41 +4.6
780,908 + ABIE53_000727 0.43 -2.5
780,908 + ABIE53_000727 0.43 -2.2
780,909 - ABIE53_000727 0.44 -1.4
780,913 + ABIE53_000727 0.44 +0.2
780,914 - ABIE53_000727 0.44 -0.6
780,914 - ABIE53_000727 0.44 -1.5
780,914 - ABIE53_000727 0.44 -1.4
780,914 - ABIE53_000727 0.44 -2.1
781,114 + ABIE53_000727 0.68 -0.8
781,114 + ABIE53_000727 0.68 -1.0
781,114 + ABIE53_000727 0.68 +2.9
781,114 + ABIE53_000727 0.68 +0.0
781,114 + ABIE53_000727 0.68 -1.0
781,114 + ABIE53_000727 0.68 -0.5
781,114 + ABIE53_000727 0.68 +0.5
781,115 - ABIE53_000727 0.68 +2.6
781,115 - ABIE53_000727 0.68 +0.3
781,115 - ABIE53_000727 0.68 -0.4
781,115 - ABIE53_000727 0.68 -0.8
781,115 - ABIE53_000727 0.68 +0.8
781,165 + ABIE53_000727 0.74 +0.3
781,166 - ABIE53_000727 0.74 -2.6
781,166 - ABIE53_000727 0.74 -0.4
781,166 - ABIE53_000727 0.74 -1.6
781,166 - ABIE53_000727 0.74 -2.2
781,166 - ABIE53_000727 0.74 +2.6
781,166 - ABIE53_000727 0.74 -1.0
781,166 - ABIE53_000727 0.74 -1.9
781,166 - ABIE53_000727 0.74 +1.3
781,200 + ABIE53_000727 0.78 +0.9
781,200 + ABIE53_000727 0.78 +1.6
781,201 - ABIE53_000727 0.78 -1.7
781,355 + -2.7
781,355 + +2.6
781,355 + +0.9
781,355 + +0.4
781,355 + +2.6
781,356 - -0.2
781,368 + -0.2
781,379 + +1.3
781,380 - -0.4
781,380 - -0.4
781,404 - -2.3
781,404 - +2.6
781,404 - -1.5
781,404 - -1.5
781,404 - -2.0
781,425 + -0.1
781,442 - -3.1
781,442 - -0.8
781,442 - -0.7
781,442 - +0.3
781,442 - -1.9
781,505 + -2.7
781,506 - -1.6
781,506 - -1.7
781,583 + ABIE53_000728 0.11 -3.8
781,583 + ABIE53_000728 0.11 -1.2
781,583 + ABIE53_000728 0.11 -1.0
781,584 - ABIE53_000728 0.11 -0.4
781,584 - ABIE53_000728 0.11 -1.8
781,584 - ABIE53_000728 0.11 -1.1
781,718 + ABIE53_000728 0.27 -1.7
781,718 + ABIE53_000728 0.27 -0.2
781,765 + ABIE53_000728 0.32 -0.2
781,765 + ABIE53_000728 0.32 -0.2
781,765 + ABIE53_000728 0.32 -2.8
781,872 + ABIE53_000728 0.44 -1.0
781,872 + ABIE53_000728 0.44 -0.5
781,872 + ABIE53_000728 0.44 -1.4
781,873 - ABIE53_000728 0.45 -2.2
781,873 - ABIE53_000728 0.45 -1.2
781,873 - ABIE53_000728 0.45 +1.0
781,873 - ABIE53_000728 0.45 -2.0
781,873 - ABIE53_000728 0.45 -1.6
781,873 - ABIE53_000728 0.45 -2.3
781,890 + ABIE53_000728 0.47 -2.7
781,890 + ABIE53_000728 0.47 -2.3
781,890 + ABIE53_000728 0.47 -1.0
781,890 + ABIE53_000728 0.47 +1.3
781,890 + ABIE53_000728 0.47 +0.3
781,891 - ABIE53_000728 0.47 -2.2
781,891 - ABIE53_000728 0.47 -2.1
781,891 - ABIE53_000728 0.47 -3.0
781,891 - ABIE53_000728 0.47 -2.8
781,891 - ABIE53_000728 0.47 -0.2
782,013 + ABIE53_000728 0.61 -1.9
782,013 + ABIE53_000728 0.61 +1.0
782,013 + ABIE53_000728 0.61 -1.3
782,014 - ABIE53_000728 0.61 -1.1
782,014 - ABIE53_000728 0.61 -0.8
782,014 - ABIE53_000728 0.61 -0.8
782,112 + ABIE53_000728 0.72 +1.0
782,112 + ABIE53_000728 0.72 -0.4
782,113 - ABIE53_000728 0.72 +0.3
782,113 - ABIE53_000728 0.72 -0.4
782,113 - ABIE53_000728 0.72 -1.0
782,115 + ABIE53_000728 0.72 +2.6
782,115 + ABIE53_000728 0.72 -1.0
782,115 + ABIE53_000728 0.72 +1.6
782,115 + ABIE53_000728 0.72 -0.7
782,116 - ABIE53_000728 0.73 -1.3
782,116 - ABIE53_000728 0.73 -1.4
782,163 + ABIE53_000728 0.78 +0.3
782,163 + ABIE53_000728 0.78 -2.2
782,163 + ABIE53_000728 0.78 +2.2
782,164 - ABIE53_000728 0.78 -3.0
782,164 - ABIE53_000728 0.78 +1.6
782,164 - ABIE53_000728 0.78 -3.8
782,333 + -0.2
782,333 + -1.4
782,334 - -2.3
782,334 - -1.4
782,334 - +0.6
782,353 - -0.7
782,418 + +0.3
782,419 - +0.6
782,419 - +0.2
782,419 - +1.6
782,454 + +1.0
782,455 - +0.6
782,465 + +1.0
782,536 + -1.0
782,537 - -0.1
782,640 + -1.5
782,729 + ABIE53_000729 0.15 +1.6
782,730 - ABIE53_000729 0.15 +0.2
782,737 - ABIE53_000729 0.16 -1.0
782,759 + ABIE53_000729 0.17 +0.6
782,759 + ABIE53_000729 0.17 +0.4
782,759 + ABIE53_000729 0.17 -1.3
782,760 - ABIE53_000729 0.18 +0.6
782,863 + ABIE53_000729 0.26 +2.6
782,863 + ABIE53_000729 0.26 -0.1
782,863 + ABIE53_000729 0.26 -1.9
782,863 + ABIE53_000729 0.26 -0.8
782,864 - ABIE53_000729 0.26 +0.4
782,864 - ABIE53_000729 0.26 -0.3
782,864 - ABIE53_000729 0.26 +2.3
782,864 - ABIE53_000729 0.26 -0.5
782,914 + ABIE53_000729 0.30 -1.2
782,914 + ABIE53_000729 0.30 -1.5
782,915 - ABIE53_000729 0.30 +0.2
782,915 - ABIE53_000729 0.30 -0.6
782,915 - ABIE53_000729 0.30 -1.2
782,915 - ABIE53_000729 0.30 -0.4
782,929 + ABIE53_000729 0.31 +0.5
782,929 + ABIE53_000729 0.31 +0.5
782,930 - ABIE53_000729 0.31 +3.6
782,950 + ABIE53_000729 0.32 -0.5
782,950 + ABIE53_000729 0.32 -0.1
782,951 - ABIE53_000729 0.32 +2.6
782,951 - ABIE53_000729 0.32 -0.5
782,951 - ABIE53_000729 0.32 -0.7
782,953 + ABIE53_000729 0.33 +0.8
782,953 + ABIE53_000729 0.33 +0.8
782,953 + ABIE53_000729 0.33 -0.2
782,953 + ABIE53_000729 0.33 +1.6
782,953 + ABIE53_000729 0.33 -0.6
782,953 + ABIE53_000729 0.33 -1.0
782,953 + ABIE53_000729 0.33 +0.6
782,953 + ABIE53_000729 0.33 -0.7
782,953 + ABIE53_000729 0.33 +1.6
782,953 + ABIE53_000729 0.33 +1.0
782,954 - ABIE53_000729 0.33 +2.2
782,954 - ABIE53_000729 0.33 +2.0
782,954 - ABIE53_000729 0.33 +0.0
782,954 - ABIE53_000729 0.33 +2.6
782,954 - ABIE53_000729 0.33 -1.2
782,954 - ABIE53_000729 0.33 +0.0
782,954 - ABIE53_000729 0.33 +1.3
782,954 - ABIE53_000729 0.33 -0.5
782,954 - ABIE53_000729 0.33 -0.4
782,954 - ABIE53_000729 0.33 +0.6
782,954 - ABIE53_000729 0.33 -1.0
782,954 - ABIE53_000729 0.33 -1.2
782,954 - ABIE53_000729 0.33 +0.5
783,229 + ABIE53_000729 0.54 -1.5

Or see this region's nucleotide sequence