Experiment: carbon source Sucrose 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5897 and Pf1N1B4_5898 are separated by 173 nucleotides Pf1N1B4_5898 and Pf1N1B4_5899 are separated by 4 nucleotides Pf1N1B4_5899 and Pf1N1B4_5900 overlap by 29 nucleotides Pf1N1B4_5900 and Pf1N1B4_5901 are separated by 57 nucleotides
Pf1N1B4_5897 - FIG00963512: hypothetical protein, at 340,631 to 342,550
_5897
Pf1N1B4_5898 - hypothetical protein, at 342,724 to 343,332
_5898
Pf1N1B4_5899 - FIG00954746: hypothetical protein, at 343,337 to 344,551
_5899
Pf1N1B4_5900 - Cellobiose phosphotransferase system YdjC-like protein, at 344,523 to 345,335
_5900
Pf1N1B4_5901 - hypothetical protein, at 345,393 to 346,082
_5901
Position (kb) 343
344
345 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 342.358 kb on - strand, within Pf1N1B4_5897 at 342.368 kb on - strand at 342.437 kb on + strand at 342.438 kb on - strand at 342.643 kb on - strand at 342.643 kb on - strand at 342.721 kb on + strand at 342.721 kb on + strand at 342.905 kb on - strand, within Pf1N1B4_5898 at 342.919 kb on + strand, within Pf1N1B4_5898 at 342.920 kb on - strand, within Pf1N1B4_5898 at 342.991 kb on + strand at 343.158 kb on + strand, within Pf1N1B4_5898 at 343.158 kb on + strand, within Pf1N1B4_5898 at 343.159 kb on - strand, within Pf1N1B4_5898 at 343.161 kb on - strand, within Pf1N1B4_5898 at 343.430 kb on - strand at 343.887 kb on + strand, within Pf1N1B4_5899 at 343.896 kb on - strand, within Pf1N1B4_5899 at 344.157 kb on - strand, within Pf1N1B4_5899 at 344.180 kb on + strand, within Pf1N1B4_5899 at 344.722 kb on - strand, within Pf1N1B4_5900 at 345.011 kb on + strand, within Pf1N1B4_5900 at 345.094 kb on + strand, within Pf1N1B4_5900 at 345.094 kb on + strand, within Pf1N1B4_5900 at 345.094 kb on + strand, within Pf1N1B4_5900 at 345.094 kb on + strand, within Pf1N1B4_5900 at 345.094 kb on + strand, within Pf1N1B4_5900 at 345.094 kb on + strand, within Pf1N1B4_5900 at 345.094 kb on + strand, within Pf1N1B4_5900 at 345.094 kb on + strand, within Pf1N1B4_5900 at 345.094 kb on + strand, within Pf1N1B4_5900 at 345.095 kb on - strand, within Pf1N1B4_5900 at 345.095 kb on - strand, within Pf1N1B4_5900 at 345.095 kb on - strand, within Pf1N1B4_5900 at 345.095 kb on - strand, within Pf1N1B4_5900 at 345.095 kb on - strand, within Pf1N1B4_5900 at 345.195 kb on + strand, within Pf1N1B4_5900 at 345.195 kb on + strand at 345.195 kb on + strand, within Pf1N1B4_5900 at 345.196 kb on - strand, within Pf1N1B4_5900 at 345.316 kb on + strand at 345.317 kb on - strand at 345.471 kb on + strand, within Pf1N1B4_5901 at 345.471 kb on + strand, within Pf1N1B4_5901 at 345.472 kb on - strand at 345.477 kb on + strand, within Pf1N1B4_5901 at 345.478 kb on - strand, within Pf1N1B4_5901 at 345.478 kb on - strand, within Pf1N1B4_5901
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source Sucrose 20mM remove 342,358 - Pf1N1B4_5897 0.90 +0.9 342,368 - +1.3 342,437 + -1.6 342,438 - -2.7 342,643 - -2.0 342,643 - +0.3 342,721 + +0.6 342,721 + +0.1 342,905 - Pf1N1B4_5898 0.30 -0.3 342,919 + Pf1N1B4_5898 0.32 +0.9 342,920 - Pf1N1B4_5898 0.32 -1.1 342,991 + +2.6 343,158 + Pf1N1B4_5898 0.71 +0.6 343,158 + Pf1N1B4_5898 0.71 -0.1 343,159 - Pf1N1B4_5898 0.71 -0.0 343,161 - Pf1N1B4_5898 0.72 -0.1 343,430 - -0.6 343,887 + Pf1N1B4_5899 0.45 +0.4 343,896 - Pf1N1B4_5899 0.46 -2.2 344,157 - Pf1N1B4_5899 0.67 -1.6 344,180 + Pf1N1B4_5899 0.69 -1.3 344,722 - Pf1N1B4_5900 0.24 -0.8 345,011 + Pf1N1B4_5900 0.60 -0.2 345,094 + Pf1N1B4_5900 0.70 -2.8 345,094 + Pf1N1B4_5900 0.70 -0.5 345,094 + Pf1N1B4_5900 0.70 -0.3 345,094 + Pf1N1B4_5900 0.70 +1.5 345,094 + Pf1N1B4_5900 0.70 +0.3 345,094 + Pf1N1B4_5900 0.70 -0.1 345,094 + Pf1N1B4_5900 0.70 +0.4 345,094 + Pf1N1B4_5900 0.70 -0.9 345,094 + Pf1N1B4_5900 0.70 -1.1 345,095 - Pf1N1B4_5900 0.70 +0.1 345,095 - Pf1N1B4_5900 0.70 -0.2 345,095 - Pf1N1B4_5900 0.70 +1.9 345,095 - Pf1N1B4_5900 0.70 -0.2 345,095 - Pf1N1B4_5900 0.70 +0.4 345,195 + Pf1N1B4_5900 0.83 +0.5 345,195 + +2.3 345,195 + Pf1N1B4_5900 0.83 -1.9 345,196 - Pf1N1B4_5900 0.83 -0.5 345,316 + +0.2 345,317 - +0.0 345,471 + Pf1N1B4_5901 0.11 +0.4 345,471 + Pf1N1B4_5901 0.11 +0.3 345,472 - -0.1 345,477 + Pf1N1B4_5901 0.12 -1.3 345,478 - Pf1N1B4_5901 0.12 -2.1 345,478 - Pf1N1B4_5901 0.12 -0.9
Or see this region's nucleotide sequence