Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5113

Experiment: carbon source Sucrose 20mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5112 and Pf1N1B4_5113 are separated by 96 nucleotidesPf1N1B4_5113 and Pf1N1B4_5114 overlap by 4 nucleotidesPf1N1B4_5114 and Pf1N1B4_5115 are separated by 27 nucleotides Pf1N1B4_5112 - sucrose ABC transporter, substrate-binding component (from data), at 5,671,718 to 5,672,890 _5112 Pf1N1B4_5113 - sucrose ABC transporter, permease component 1 (from data), at 5,672,987 to 5,673,874 _5113 Pf1N1B4_5114 - sucrose ABC transporter, permease component 2 (from data), at 5,673,871 to 5,674,713 _5114 Pf1N1B4_5115 - sucrose ABC transporter, ATPase component (from data), at 5,674,741 to 5,675,886 _5115 Position (kb) 5672 5673 5674Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 5671.993 kb on - strand, within Pf1N1B4_5112at 5672.043 kb on - strand, within Pf1N1B4_5112at 5672.069 kb on + strand, within Pf1N1B4_5112at 5672.070 kb on - strand, within Pf1N1B4_5112at 5672.168 kb on + strandat 5672.169 kb on - strand, within Pf1N1B4_5112at 5672.411 kb on - strand, within Pf1N1B4_5112at 5672.639 kb on + strandat 5672.640 kb on - strand, within Pf1N1B4_5112at 5672.973 kb on + strandat 5673.134 kb on + strand, within Pf1N1B4_5113at 5673.134 kb on + strand, within Pf1N1B4_5113at 5673.213 kb on - strandat 5673.246 kb on + strand, within Pf1N1B4_5113at 5673.692 kb on + strand, within Pf1N1B4_5113at 5673.692 kb on + strand, within Pf1N1B4_5113at 5673.693 kb on - strand, within Pf1N1B4_5113at 5673.737 kb on + strand, within Pf1N1B4_5113at 5673.737 kb on + strand, within Pf1N1B4_5113at 5674.045 kb on + strand, within Pf1N1B4_5114at 5674.476 kb on - strand, within Pf1N1B4_5114at 5674.792 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source Sucrose 20mM
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5,671,993 - Pf1N1B4_5112 0.23 -2.1
5,672,043 - Pf1N1B4_5112 0.28 -1.9
5,672,069 + Pf1N1B4_5112 0.30 -1.1
5,672,070 - Pf1N1B4_5112 0.30 -4.4
5,672,168 + +0.3
5,672,169 - Pf1N1B4_5112 0.38 -2.1
5,672,411 - Pf1N1B4_5112 0.59 -2.4
5,672,639 + -0.7
5,672,640 - Pf1N1B4_5112 0.79 -2.3
5,672,973 + -4.6
5,673,134 + Pf1N1B4_5113 0.17 -2.9
5,673,134 + Pf1N1B4_5113 0.17 -2.6
5,673,213 - -2.2
5,673,246 + Pf1N1B4_5113 0.29 -1.4
5,673,692 + Pf1N1B4_5113 0.79 -3.1
5,673,692 + Pf1N1B4_5113 0.79 -4.2
5,673,693 - Pf1N1B4_5113 0.80 -2.7
5,673,737 + Pf1N1B4_5113 0.84 -4.8
5,673,737 + Pf1N1B4_5113 0.84 -0.3
5,674,045 + Pf1N1B4_5114 0.21 -2.0
5,674,476 - Pf1N1B4_5114 0.72 -2.5
5,674,792 - -4.4

Or see this region's nucleotide sequence