Experiment: carbon source Sucrose 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4452 and Pf1N1B4_4453 are separated by 428 nucleotides Pf1N1B4_4453 and Pf1N1B4_4454 overlap by 4 nucleotides Pf1N1B4_4454 and Pf1N1B4_4455 are separated by 11 nucleotides
Pf1N1B4_4452 - hypothetical protein, at 4,913,292 to 4,913,438
_4452
Pf1N1B4_4453 - Sensory histidine kinase QseC, at 4,913,867 to 4,915,270
_4453
Pf1N1B4_4454 - Two-component system response regulator QseB, at 4,915,267 to 4,915,929
_4454
Pf1N1B4_4455 - FIG00953528: hypothetical protein, at 4,915,941 to 4,916,585
_4455
Position (kb)
4913
4914
4915
4916 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4912.966 kb on + strand at 4913.123 kb on - strand at 4913.162 kb on + strand at 4913.162 kb on + strand at 4913.258 kb on + strand at 4913.284 kb on - strand at 4913.439 kb on + strand at 4913.440 kb on - strand at 4913.440 kb on - strand at 4913.500 kb on + strand at 4913.531 kb on + strand at 4913.531 kb on + strand at 4913.531 kb on + strand at 4913.559 kb on + strand at 4913.559 kb on + strand at 4913.560 kb on - strand at 4913.601 kb on + strand at 4913.691 kb on - strand at 4914.114 kb on + strand, within Pf1N1B4_4453 at 4914.566 kb on + strand, within Pf1N1B4_4453 at 4914.567 kb on - strand, within Pf1N1B4_4453 at 4914.778 kb on + strand, within Pf1N1B4_4453 at 4914.786 kb on - strand, within Pf1N1B4_4453 at 4914.786 kb on - strand, within Pf1N1B4_4453 at 4914.786 kb on - strand, within Pf1N1B4_4453 at 4914.786 kb on - strand, within Pf1N1B4_4453 at 4914.968 kb on + strand, within Pf1N1B4_4453 at 4914.969 kb on - strand, within Pf1N1B4_4453 at 4914.969 kb on - strand, within Pf1N1B4_4453 at 4915.014 kb on + strand, within Pf1N1B4_4453 at 4915.015 kb on - strand, within Pf1N1B4_4453 at 4915.015 kb on - strand, within Pf1N1B4_4453 at 4915.071 kb on + strand, within Pf1N1B4_4453 at 4915.155 kb on + strand at 4915.156 kb on - strand at 4915.305 kb on + strand at 4915.351 kb on - strand, within Pf1N1B4_4454 at 4915.502 kb on + strand, within Pf1N1B4_4454 at 4915.502 kb on + strand, within Pf1N1B4_4454 at 4915.919 kb on - strand at 4915.922 kb on - strand at 4916.107 kb on + strand, within Pf1N1B4_4455 at 4916.108 kb on - strand, within Pf1N1B4_4455 at 4916.212 kb on + strand, within Pf1N1B4_4455 at 4916.212 kb on + strand, within Pf1N1B4_4455 at 4916.231 kb on + strand, within Pf1N1B4_4455
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source Sucrose 20mM remove 4,912,966 + +0.4 4,913,123 - +0.9 4,913,162 + +0.4 4,913,162 + +2.1 4,913,258 + -2.2 4,913,284 - -1.1 4,913,439 + +0.3 4,913,440 - -1.1 4,913,440 - +1.4 4,913,500 + +0.4 4,913,531 + -0.6 4,913,531 + -0.8 4,913,531 + -1.1 4,913,559 + -0.3 4,913,559 + +0.4 4,913,560 - +0.1 4,913,601 + +2.4 4,913,691 - +0.4 4,914,114 + Pf1N1B4_4453 0.18 +0.3 4,914,566 + Pf1N1B4_4453 0.50 -1.6 4,914,567 - Pf1N1B4_4453 0.50 -2.2 4,914,778 + Pf1N1B4_4453 0.65 -0.4 4,914,786 - Pf1N1B4_4453 0.65 +0.5 4,914,786 - Pf1N1B4_4453 0.65 -0.7 4,914,786 - Pf1N1B4_4453 0.65 +0.1 4,914,786 - Pf1N1B4_4453 0.65 -0.6 4,914,968 + Pf1N1B4_4453 0.78 -0.2 4,914,969 - Pf1N1B4_4453 0.78 -0.8 4,914,969 - Pf1N1B4_4453 0.78 -2.7 4,915,014 + Pf1N1B4_4453 0.82 -0.5 4,915,015 - Pf1N1B4_4453 0.82 -0.8 4,915,015 - Pf1N1B4_4453 0.82 +1.5 4,915,071 + Pf1N1B4_4453 0.86 +0.1 4,915,155 + +0.1 4,915,156 - +1.2 4,915,305 + -0.6 4,915,351 - Pf1N1B4_4454 0.13 +0.8 4,915,502 + Pf1N1B4_4454 0.35 -0.6 4,915,502 + Pf1N1B4_4454 0.35 -0.8 4,915,919 - -1.0 4,915,922 - +0.2 4,916,107 + Pf1N1B4_4455 0.26 +0.4 4,916,108 - Pf1N1B4_4455 0.26 +0.1 4,916,212 + Pf1N1B4_4455 0.42 +0.3 4,916,212 + Pf1N1B4_4455 0.42 +1.8 4,916,231 + Pf1N1B4_4455 0.45 +0.1
Or see this region's nucleotide sequence