Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3536

Experiment: carbon source Sucrose 20mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3535 and Pf1N1B4_3536 are separated by 162 nucleotidesPf1N1B4_3536 and Pf1N1B4_3537 overlap by 7 nucleotides Pf1N1B4_3535 - Tfp pilus assembly protein FimV, at 3,941,730 to 3,943,547 _3535 Pf1N1B4_3536 - SelT/selW/selH selenoprotein domain, at 3,943,710 to 3,943,997 _3536 Pf1N1B4_3537 - Permease of the drug/metabolite transporter (DMT) superfamily, at 3,943,991 to 3,944,884 _3537 Position (kb) 3943 3944Strain fitness (log2 ratio) -2 -1 0 1 2at 3942.783 kb on + strand, within Pf1N1B4_3535at 3942.783 kb on + strand, within Pf1N1B4_3535at 3942.783 kb on + strand, within Pf1N1B4_3535at 3942.783 kb on + strand, within Pf1N1B4_3535at 3942.783 kb on + strand, within Pf1N1B4_3535at 3942.784 kb on - strand, within Pf1N1B4_3535at 3942.784 kb on - strand, within Pf1N1B4_3535at 3942.784 kb on - strand, within Pf1N1B4_3535at 3942.784 kb on - strand, within Pf1N1B4_3535at 3942.784 kb on - strand, within Pf1N1B4_3535at 3942.792 kb on + strand, within Pf1N1B4_3535at 3942.912 kb on + strand, within Pf1N1B4_3535at 3942.912 kb on + strandat 3942.913 kb on - strand, within Pf1N1B4_3535at 3942.913 kb on - strand, within Pf1N1B4_3535at 3942.913 kb on - strand, within Pf1N1B4_3535at 3942.913 kb on - strand, within Pf1N1B4_3535at 3942.913 kb on - strand, within Pf1N1B4_3535at 3942.913 kb on - strand, within Pf1N1B4_3535at 3943.216 kb on + strand, within Pf1N1B4_3535at 3943.216 kb on + strand, within Pf1N1B4_3535at 3943.216 kb on + strand, within Pf1N1B4_3535at 3943.216 kb on + strand, within Pf1N1B4_3535at 3943.216 kb on + strandat 3943.216 kb on + strandat 3943.216 kb on + strand, within Pf1N1B4_3535at 3943.216 kb on + strand, within Pf1N1B4_3535at 3943.216 kb on + strand, within Pf1N1B4_3535at 3943.216 kb on + strand, within Pf1N1B4_3535at 3943.216 kb on + strand, within Pf1N1B4_3535at 3943.216 kb on + strand, within Pf1N1B4_3535at 3943.217 kb on - strand, within Pf1N1B4_3535at 3943.217 kb on - strand, within Pf1N1B4_3535at 3943.217 kb on - strand, within Pf1N1B4_3535at 3943.217 kb on - strand, within Pf1N1B4_3535at 3943.217 kb on - strand, within Pf1N1B4_3535at 3943.217 kb on - strand, within Pf1N1B4_3535at 3943.217 kb on - strand, within Pf1N1B4_3535at 3943.563 kb on - strandat 3943.563 kb on - strandat 3943.563 kb on - strandat 3943.563 kb on - strandat 3943.563 kb on - strandat 3943.647 kb on + strandat 3943.647 kb on + strandat 3943.721 kb on + strandat 3943.721 kb on + strandat 3943.743 kb on + strand, within Pf1N1B4_3536at 3943.743 kb on + strand, within Pf1N1B4_3536at 3943.743 kb on + strand, within Pf1N1B4_3536at 3943.744 kb on - strand, within Pf1N1B4_3536at 3943.744 kb on - strand, within Pf1N1B4_3536at 3943.744 kb on - strand, within Pf1N1B4_3536at 3943.744 kb on - strand, within Pf1N1B4_3536at 3943.744 kb on - strand, within Pf1N1B4_3536at 3943.802 kb on + strand, within Pf1N1B4_3536at 3943.802 kb on + strand, within Pf1N1B4_3536at 3943.802 kb on + strand, within Pf1N1B4_3536at 3944.279 kb on + strand, within Pf1N1B4_3537at 3944.279 kb on + strand, within Pf1N1B4_3537at 3944.280 kb on - strand, within Pf1N1B4_3537at 3944.288 kb on + strand, within Pf1N1B4_3537at 3944.289 kb on - strand, within Pf1N1B4_3537at 3944.289 kb on - strand, within Pf1N1B4_3537at 3944.289 kb on - strand, within Pf1N1B4_3537at 3944.289 kb on - strand, within Pf1N1B4_3537at 3944.495 kb on - strand, within Pf1N1B4_3537at 3944.495 kb on - strand, within Pf1N1B4_3537at 3944.495 kb on - strand, within Pf1N1B4_3537at 3944.498 kb on - strand, within Pf1N1B4_3537at 3944.898 kb on - strandat 3944.935 kb on - strandat 3944.935 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source Sucrose 20mM
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3,942,783 + Pf1N1B4_3535 0.58 +0.6
3,942,783 + Pf1N1B4_3535 0.58 -0.6
3,942,783 + Pf1N1B4_3535 0.58 -0.6
3,942,783 + Pf1N1B4_3535 0.58 +0.5
3,942,783 + Pf1N1B4_3535 0.58 +0.0
3,942,784 - Pf1N1B4_3535 0.58 -0.4
3,942,784 - Pf1N1B4_3535 0.58 -1.1
3,942,784 - Pf1N1B4_3535 0.58 -2.3
3,942,784 - Pf1N1B4_3535 0.58 -0.1
3,942,784 - Pf1N1B4_3535 0.58 +0.4
3,942,792 + Pf1N1B4_3535 0.58 +0.8
3,942,912 + Pf1N1B4_3535 0.65 +0.2
3,942,912 + +0.7
3,942,913 - Pf1N1B4_3535 0.65 +0.6
3,942,913 - Pf1N1B4_3535 0.65 +1.0
3,942,913 - Pf1N1B4_3535 0.65 -0.4
3,942,913 - Pf1N1B4_3535 0.65 +0.5
3,942,913 - Pf1N1B4_3535 0.65 -0.5
3,942,913 - Pf1N1B4_3535 0.65 -1.0
3,943,216 + Pf1N1B4_3535 0.82 -1.0
3,943,216 + Pf1N1B4_3535 0.82 +0.1
3,943,216 + Pf1N1B4_3535 0.82 -0.3
3,943,216 + Pf1N1B4_3535 0.82 -0.9
3,943,216 + -2.1
3,943,216 + +0.7
3,943,216 + Pf1N1B4_3535 0.82 +0.6
3,943,216 + Pf1N1B4_3535 0.82 -0.1
3,943,216 + Pf1N1B4_3535 0.82 -1.2
3,943,216 + Pf1N1B4_3535 0.82 +0.9
3,943,216 + Pf1N1B4_3535 0.82 -0.5
3,943,216 + Pf1N1B4_3535 0.82 +0.1
3,943,217 - Pf1N1B4_3535 0.82 -0.3
3,943,217 - Pf1N1B4_3535 0.82 +1.2
3,943,217 - Pf1N1B4_3535 0.82 +0.5
3,943,217 - Pf1N1B4_3535 0.82 +0.6
3,943,217 - Pf1N1B4_3535 0.82 -1.0
3,943,217 - Pf1N1B4_3535 0.82 +1.7
3,943,217 - Pf1N1B4_3535 0.82 +0.2
3,943,563 - +2.5
3,943,563 - -1.3
3,943,563 - +0.9
3,943,563 - +0.1
3,943,563 - +1.8
3,943,647 + +0.3
3,943,647 + +0.4
3,943,721 + +1.2
3,943,721 + -0.5
3,943,743 + Pf1N1B4_3536 0.11 -1.2
3,943,743 + Pf1N1B4_3536 0.11 -1.0
3,943,743 + Pf1N1B4_3536 0.11 -1.4
3,943,744 - Pf1N1B4_3536 0.12 -1.9
3,943,744 - Pf1N1B4_3536 0.12 -1.7
3,943,744 - Pf1N1B4_3536 0.12 -1.6
3,943,744 - Pf1N1B4_3536 0.12 -1.4
3,943,744 - Pf1N1B4_3536 0.12 -0.8
3,943,802 + Pf1N1B4_3536 0.32 -0.4
3,943,802 + Pf1N1B4_3536 0.32 +2.2
3,943,802 + Pf1N1B4_3536 0.32 -1.4
3,944,279 + Pf1N1B4_3537 0.32 -0.7
3,944,279 + Pf1N1B4_3537 0.32 +0.9
3,944,280 - Pf1N1B4_3537 0.32 -0.1
3,944,288 + Pf1N1B4_3537 0.33 -0.5
3,944,289 - Pf1N1B4_3537 0.33 -0.5
3,944,289 - Pf1N1B4_3537 0.33 -1.2
3,944,289 - Pf1N1B4_3537 0.33 +0.2
3,944,289 - Pf1N1B4_3537 0.33 +0.7
3,944,495 - Pf1N1B4_3537 0.56 +0.2
3,944,495 - Pf1N1B4_3537 0.56 +0.1
3,944,495 - Pf1N1B4_3537 0.56 +0.1
3,944,498 - Pf1N1B4_3537 0.57 +0.2
3,944,898 - +1.9
3,944,935 - +0.2
3,944,935 - +0.6

Or see this region's nucleotide sequence