Experiment: carbon source Sucrose 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3535 and Pf1N1B4_3536 are separated by 162 nucleotides Pf1N1B4_3536 and Pf1N1B4_3537 overlap by 7 nucleotides
Pf1N1B4_3535 - Tfp pilus assembly protein FimV, at 3,941,730 to 3,943,547
_3535
Pf1N1B4_3536 - SelT/selW/selH selenoprotein domain, at 3,943,710 to 3,943,997
_3536
Pf1N1B4_3537 - Permease of the drug/metabolite transporter (DMT) superfamily, at 3,943,991 to 3,944,884
_3537
Position (kb)
3943
3944 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3942.783 kb on + strand, within Pf1N1B4_3535 at 3942.783 kb on + strand, within Pf1N1B4_3535 at 3942.783 kb on + strand, within Pf1N1B4_3535 at 3942.783 kb on + strand, within Pf1N1B4_3535 at 3942.783 kb on + strand, within Pf1N1B4_3535 at 3942.784 kb on - strand, within Pf1N1B4_3535 at 3942.784 kb on - strand, within Pf1N1B4_3535 at 3942.784 kb on - strand, within Pf1N1B4_3535 at 3942.784 kb on - strand, within Pf1N1B4_3535 at 3942.784 kb on - strand, within Pf1N1B4_3535 at 3942.792 kb on + strand, within Pf1N1B4_3535 at 3942.912 kb on + strand, within Pf1N1B4_3535 at 3942.912 kb on + strand at 3942.913 kb on - strand, within Pf1N1B4_3535 at 3942.913 kb on - strand, within Pf1N1B4_3535 at 3942.913 kb on - strand, within Pf1N1B4_3535 at 3942.913 kb on - strand, within Pf1N1B4_3535 at 3942.913 kb on - strand, within Pf1N1B4_3535 at 3942.913 kb on - strand, within Pf1N1B4_3535 at 3943.216 kb on + strand, within Pf1N1B4_3535 at 3943.216 kb on + strand, within Pf1N1B4_3535 at 3943.216 kb on + strand, within Pf1N1B4_3535 at 3943.216 kb on + strand, within Pf1N1B4_3535 at 3943.216 kb on + strand at 3943.216 kb on + strand at 3943.216 kb on + strand, within Pf1N1B4_3535 at 3943.216 kb on + strand, within Pf1N1B4_3535 at 3943.216 kb on + strand, within Pf1N1B4_3535 at 3943.216 kb on + strand, within Pf1N1B4_3535 at 3943.216 kb on + strand, within Pf1N1B4_3535 at 3943.216 kb on + strand, within Pf1N1B4_3535 at 3943.217 kb on - strand, within Pf1N1B4_3535 at 3943.217 kb on - strand, within Pf1N1B4_3535 at 3943.217 kb on - strand, within Pf1N1B4_3535 at 3943.217 kb on - strand, within Pf1N1B4_3535 at 3943.217 kb on - strand, within Pf1N1B4_3535 at 3943.217 kb on - strand, within Pf1N1B4_3535 at 3943.217 kb on - strand, within Pf1N1B4_3535 at 3943.563 kb on - strand at 3943.563 kb on - strand at 3943.563 kb on - strand at 3943.563 kb on - strand at 3943.563 kb on - strand at 3943.647 kb on + strand at 3943.647 kb on + strand at 3943.721 kb on + strand at 3943.721 kb on + strand at 3943.743 kb on + strand, within Pf1N1B4_3536 at 3943.743 kb on + strand, within Pf1N1B4_3536 at 3943.743 kb on + strand, within Pf1N1B4_3536 at 3943.744 kb on - strand, within Pf1N1B4_3536 at 3943.744 kb on - strand, within Pf1N1B4_3536 at 3943.744 kb on - strand, within Pf1N1B4_3536 at 3943.744 kb on - strand, within Pf1N1B4_3536 at 3943.744 kb on - strand, within Pf1N1B4_3536 at 3943.802 kb on + strand, within Pf1N1B4_3536 at 3943.802 kb on + strand, within Pf1N1B4_3536 at 3943.802 kb on + strand, within Pf1N1B4_3536 at 3944.279 kb on + strand, within Pf1N1B4_3537 at 3944.279 kb on + strand, within Pf1N1B4_3537 at 3944.280 kb on - strand, within Pf1N1B4_3537 at 3944.288 kb on + strand, within Pf1N1B4_3537 at 3944.289 kb on - strand, within Pf1N1B4_3537 at 3944.289 kb on - strand, within Pf1N1B4_3537 at 3944.289 kb on - strand, within Pf1N1B4_3537 at 3944.289 kb on - strand, within Pf1N1B4_3537 at 3944.495 kb on - strand, within Pf1N1B4_3537 at 3944.495 kb on - strand, within Pf1N1B4_3537 at 3944.495 kb on - strand, within Pf1N1B4_3537 at 3944.498 kb on - strand, within Pf1N1B4_3537 at 3944.898 kb on - strand at 3944.935 kb on - strand at 3944.935 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source Sucrose 20mM remove 3,942,783 + Pf1N1B4_3535 0.58 +0.6 3,942,783 + Pf1N1B4_3535 0.58 -0.6 3,942,783 + Pf1N1B4_3535 0.58 -0.6 3,942,783 + Pf1N1B4_3535 0.58 +0.5 3,942,783 + Pf1N1B4_3535 0.58 +0.0 3,942,784 - Pf1N1B4_3535 0.58 -0.4 3,942,784 - Pf1N1B4_3535 0.58 -1.1 3,942,784 - Pf1N1B4_3535 0.58 -2.3 3,942,784 - Pf1N1B4_3535 0.58 -0.1 3,942,784 - Pf1N1B4_3535 0.58 +0.4 3,942,792 + Pf1N1B4_3535 0.58 +0.8 3,942,912 + Pf1N1B4_3535 0.65 +0.2 3,942,912 + +0.7 3,942,913 - Pf1N1B4_3535 0.65 +0.6 3,942,913 - Pf1N1B4_3535 0.65 +1.0 3,942,913 - Pf1N1B4_3535 0.65 -0.4 3,942,913 - Pf1N1B4_3535 0.65 +0.5 3,942,913 - Pf1N1B4_3535 0.65 -0.5 3,942,913 - Pf1N1B4_3535 0.65 -1.0 3,943,216 + Pf1N1B4_3535 0.82 -1.0 3,943,216 + Pf1N1B4_3535 0.82 +0.1 3,943,216 + Pf1N1B4_3535 0.82 -0.3 3,943,216 + Pf1N1B4_3535 0.82 -0.9 3,943,216 + -2.1 3,943,216 + +0.7 3,943,216 + Pf1N1B4_3535 0.82 +0.6 3,943,216 + Pf1N1B4_3535 0.82 -0.1 3,943,216 + Pf1N1B4_3535 0.82 -1.2 3,943,216 + Pf1N1B4_3535 0.82 +0.9 3,943,216 + Pf1N1B4_3535 0.82 -0.5 3,943,216 + Pf1N1B4_3535 0.82 +0.1 3,943,217 - Pf1N1B4_3535 0.82 -0.3 3,943,217 - Pf1N1B4_3535 0.82 +1.2 3,943,217 - Pf1N1B4_3535 0.82 +0.5 3,943,217 - Pf1N1B4_3535 0.82 +0.6 3,943,217 - Pf1N1B4_3535 0.82 -1.0 3,943,217 - Pf1N1B4_3535 0.82 +1.7 3,943,217 - Pf1N1B4_3535 0.82 +0.2 3,943,563 - +2.5 3,943,563 - -1.3 3,943,563 - +0.9 3,943,563 - +0.1 3,943,563 - +1.8 3,943,647 + +0.3 3,943,647 + +0.4 3,943,721 + +1.2 3,943,721 + -0.5 3,943,743 + Pf1N1B4_3536 0.11 -1.2 3,943,743 + Pf1N1B4_3536 0.11 -1.0 3,943,743 + Pf1N1B4_3536 0.11 -1.4 3,943,744 - Pf1N1B4_3536 0.12 -1.9 3,943,744 - Pf1N1B4_3536 0.12 -1.7 3,943,744 - Pf1N1B4_3536 0.12 -1.6 3,943,744 - Pf1N1B4_3536 0.12 -1.4 3,943,744 - Pf1N1B4_3536 0.12 -0.8 3,943,802 + Pf1N1B4_3536 0.32 -0.4 3,943,802 + Pf1N1B4_3536 0.32 +2.2 3,943,802 + Pf1N1B4_3536 0.32 -1.4 3,944,279 + Pf1N1B4_3537 0.32 -0.7 3,944,279 + Pf1N1B4_3537 0.32 +0.9 3,944,280 - Pf1N1B4_3537 0.32 -0.1 3,944,288 + Pf1N1B4_3537 0.33 -0.5 3,944,289 - Pf1N1B4_3537 0.33 -0.5 3,944,289 - Pf1N1B4_3537 0.33 -1.2 3,944,289 - Pf1N1B4_3537 0.33 +0.2 3,944,289 - Pf1N1B4_3537 0.33 +0.7 3,944,495 - Pf1N1B4_3537 0.56 +0.2 3,944,495 - Pf1N1B4_3537 0.56 +0.1 3,944,495 - Pf1N1B4_3537 0.56 +0.1 3,944,498 - Pf1N1B4_3537 0.57 +0.2 3,944,898 - +1.9 3,944,935 - +0.2 3,944,935 - +0.6
Or see this region's nucleotide sequence