Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS17120 and RALBFv3_RS17125 are separated by 22 nucleotides RALBFv3_RS17125 and RALBFv3_RS17130 are separated by 112 nucleotides RALBFv3_RS17130 and RALBFv3_RS17135 are separated by 152 nucleotides RALBFv3_RS17135 and RALBFv3_RS24240 are separated by 140 nucleotides
RALBFv3_RS17120: RALBFv3_RS17120 - GntR family transcriptional regulator, at 331,450 to 332,106
_RS17120
RALBFv3_RS17125: RALBFv3_RS17125 - LysR family transcriptional regulator, at 332,129 to 332,344
_RS17125
RALBFv3_RS17130: RALBFv3_RS17130 - putative type III effector protein, at 332,457 to 333,755
_RS17130
RALBFv3_RS17135: RALBFv3_RS17135 - acyl-CoA dehydrogenase, at 333,908 to 334,261
_RS17135
RALBFv3_RS24240: RALBFv3_RS24240 - hypothetical protein, at 334,402 to 334,641
_RS24240
Position (kb) 332
333
334 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 331.488 kb on + strand at 331.624 kb on + strand, within RALBFv3_RS17120 at 331.754 kb on + strand, within RALBFv3_RS17120 at 331.754 kb on + strand, within RALBFv3_RS17120 at 331.780 kb on + strand, within RALBFv3_RS17120 at 331.780 kb on + strand, within RALBFv3_RS17120 at 331.780 kb on + strand, within RALBFv3_RS17120 at 331.780 kb on + strand, within RALBFv3_RS17120 at 331.780 kb on + strand, within RALBFv3_RS17120 at 331.781 kb on - strand, within RALBFv3_RS17120 at 332.065 kb on + strand at 332.065 kb on + strand at 332.065 kb on + strand at 332.066 kb on - strand at 332.422 kb on + strand at 332.423 kb on - strand at 332.424 kb on + strand at 332.424 kb on + strand at 332.425 kb on - strand at 332.457 kb on - strand at 332.646 kb on + strand, within RALBFv3_RS17130 at 332.646 kb on + strand, within RALBFv3_RS17130 at 332.646 kb on + strand, within RALBFv3_RS17130 at 332.646 kb on + strand, within RALBFv3_RS17130 at 332.646 kb on + strand, within RALBFv3_RS17130 at 332.762 kb on + strand, within RALBFv3_RS17130 at 332.763 kb on - strand, within RALBFv3_RS17130 at 332.763 kb on - strand, within RALBFv3_RS17130 at 332.763 kb on - strand, within RALBFv3_RS17130 at 332.857 kb on + strand, within RALBFv3_RS17130 at 332.857 kb on + strand, within RALBFv3_RS17130 at 332.857 kb on + strand, within RALBFv3_RS17130 at 332.858 kb on - strand, within RALBFv3_RS17130 at 332.858 kb on - strand, within RALBFv3_RS17130 at 332.858 kb on - strand, within RALBFv3_RS17130 at 332.858 kb on - strand, within RALBFv3_RS17130 at 332.887 kb on - strand, within RALBFv3_RS17130 at 332.887 kb on - strand, within RALBFv3_RS17130 at 332.942 kb on + strand, within RALBFv3_RS17130 at 332.943 kb on - strand, within RALBFv3_RS17130 at 332.943 kb on - strand, within RALBFv3_RS17130 at 332.943 kb on - strand, within RALBFv3_RS17130 at 332.944 kb on - strand, within RALBFv3_RS17130 at 333.027 kb on + strand, within RALBFv3_RS17130 at 333.028 kb on - strand, within RALBFv3_RS17130 at 333.222 kb on + strand, within RALBFv3_RS17130 at 333.222 kb on + strand, within RALBFv3_RS17130 at 333.222 kb on + strand, within RALBFv3_RS17130 at 333.223 kb on - strand, within RALBFv3_RS17130 at 333.226 kb on + strand, within RALBFv3_RS17130 at 333.227 kb on - strand, within RALBFv3_RS17130 at 333.333 kb on - strand, within RALBFv3_RS17130 at 333.440 kb on + strand, within RALBFv3_RS17130 at 333.524 kb on - strand, within RALBFv3_RS17130 at 333.524 kb on - strand, within RALBFv3_RS17130 at 333.597 kb on + strand, within RALBFv3_RS17130 at 333.598 kb on - strand, within RALBFv3_RS17130 at 333.919 kb on - strand at 334.116 kb on - strand, within RALBFv3_RS17135 at 334.146 kb on - strand, within RALBFv3_RS17135 at 334.181 kb on + strand, within RALBFv3_RS17135 at 334.181 kb on + strand, within RALBFv3_RS17135 at 334.181 kb on + strand, within RALBFv3_RS17135 at 334.181 kb on + strand, within RALBFv3_RS17135 at 334.220 kb on + strand, within RALBFv3_RS17135 at 334.220 kb on + strand, within RALBFv3_RS17135 at 334.220 kb on + strand, within RALBFv3_RS17135 at 334.220 kb on + strand, within RALBFv3_RS17135 at 334.220 kb on + strand, within RALBFv3_RS17135 at 334.220 kb on + strand, within RALBFv3_RS17135 at 334.221 kb on - strand, within RALBFv3_RS17135 at 334.221 kb on - strand, within RALBFv3_RS17135
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days remove 331,488 + +0.1 331,624 + RALBFv3_RS17120 0.26 -0.2 331,754 + RALBFv3_RS17120 0.46 +0.9 331,754 + RALBFv3_RS17120 0.46 +0.7 331,780 + RALBFv3_RS17120 0.50 -1.2 331,780 + RALBFv3_RS17120 0.50 -0.2 331,780 + RALBFv3_RS17120 0.50 +0.4 331,780 + RALBFv3_RS17120 0.50 +0.8 331,780 + RALBFv3_RS17120 0.50 +0.9 331,781 - RALBFv3_RS17120 0.50 -0.4 332,065 + -1.3 332,065 + -0.5 332,065 + -0.8 332,066 - +0.2 332,422 + +0.3 332,423 - -0.2 332,424 + +0.3 332,424 + +0.8 332,425 - -0.5 332,457 - -0.0 332,646 + RALBFv3_RS17130 0.15 +1.4 332,646 + RALBFv3_RS17130 0.15 -1.2 332,646 + RALBFv3_RS17130 0.15 -1.8 332,646 + RALBFv3_RS17130 0.15 +0.3 332,646 + RALBFv3_RS17130 0.15 -0.3 332,762 + RALBFv3_RS17130 0.23 -1.9 332,763 - RALBFv3_RS17130 0.24 -0.7 332,763 - RALBFv3_RS17130 0.24 +1.8 332,763 - RALBFv3_RS17130 0.24 +1.0 332,857 + RALBFv3_RS17130 0.31 -0.4 332,857 + RALBFv3_RS17130 0.31 -0.0 332,857 + RALBFv3_RS17130 0.31 +1.0 332,858 - RALBFv3_RS17130 0.31 +0.4 332,858 - RALBFv3_RS17130 0.31 -0.3 332,858 - RALBFv3_RS17130 0.31 +0.1 332,858 - RALBFv3_RS17130 0.31 -0.4 332,887 - RALBFv3_RS17130 0.33 +0.8 332,887 - RALBFv3_RS17130 0.33 +0.2 332,942 + RALBFv3_RS17130 0.37 -1.2 332,943 - RALBFv3_RS17130 0.37 -0.6 332,943 - RALBFv3_RS17130 0.37 -0.4 332,943 - RALBFv3_RS17130 0.37 -0.3 332,944 - RALBFv3_RS17130 0.37 -0.5 333,027 + RALBFv3_RS17130 0.44 -0.2 333,028 - RALBFv3_RS17130 0.44 -0.4 333,222 + RALBFv3_RS17130 0.59 -0.8 333,222 + RALBFv3_RS17130 0.59 -0.4 333,222 + RALBFv3_RS17130 0.59 -0.1 333,223 - RALBFv3_RS17130 0.59 -0.8 333,226 + RALBFv3_RS17130 0.59 -0.4 333,227 - RALBFv3_RS17130 0.59 +0.2 333,333 - RALBFv3_RS17130 0.67 -1.4 333,440 + RALBFv3_RS17130 0.76 -0.4 333,524 - RALBFv3_RS17130 0.82 +0.5 333,524 - RALBFv3_RS17130 0.82 -0.3 333,597 + RALBFv3_RS17130 0.88 -0.4 333,598 - RALBFv3_RS17130 0.88 -1.4 333,919 - -0.8 334,116 - RALBFv3_RS17135 0.59 -0.8 334,146 - RALBFv3_RS17135 0.67 -0.7 334,181 + RALBFv3_RS17135 0.77 -0.3 334,181 + RALBFv3_RS17135 0.77 -0.5 334,181 + RALBFv3_RS17135 0.77 -0.0 334,181 + RALBFv3_RS17135 0.77 -0.3 334,220 + RALBFv3_RS17135 0.88 -0.9 334,220 + RALBFv3_RS17135 0.88 -0.5 334,220 + RALBFv3_RS17135 0.88 -0.3 334,220 + RALBFv3_RS17135 0.88 +4.1 334,220 + RALBFv3_RS17135 0.88 +0.0 334,220 + RALBFv3_RS17135 0.88 -0.6 334,221 - RALBFv3_RS17135 0.88 +0.5 334,221 - RALBFv3_RS17135 0.88 +0.4
Or see this region's nucleotide sequence