Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS08860

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS08850 and RALBFv3_RS08855 are separated by 28 nucleotidesRALBFv3_RS08855 and RALBFv3_RS08860 are separated by 41 nucleotidesRALBFv3_RS08860 and RALBFv3_RS08865 overlap by 1 nucleotides RALBFv3_RS08850: RALBFv3_RS08850 - chromosome partitioning protein ParB, at 1,956,416 to 1,957,327 _RS08850 RALBFv3_RS08855: RALBFv3_RS08855 - ParA family protein, at 1,957,356 to 1,958,141 _RS08855 RALBFv3_RS08860: RALBFv3_RS08860 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 1,958,183 to 1,958,860 _RS08860 RALBFv3_RS08865: RALBFv3_RS08865 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 1,958,860 to 1,960,803 _RS08865 Position (kb) 1958 1959Strain fitness (log2 ratio) -3 -2 -1 0 1at 1957.453 kb on - strand, within RALBFv3_RS08855at 1957.687 kb on + strand, within RALBFv3_RS08855

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
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1,957,453 - RALBFv3_RS08855 0.12 -1.9
1,957,687 + RALBFv3_RS08855 0.42 -3.3

Or see this region's nucleotide sequence