Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS00350

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS00345 and RALBFv3_RS00350 overlap by 4 nucleotidesRALBFv3_RS00350 and RALBFv3_RS00355 are separated by 63 nucleotides RALBFv3_RS00345: RALBFv3_RS00345 - NAD-dependent DNA ligase LigA, at 79,404 to 81,845 _RS00345 RALBFv3_RS00350: RALBFv3_RS00350 - peptide deformylase, at 81,842 to 82,375 _RS00350 RALBFv3_RS00355: RALBFv3_RS00355 - hypothetical protein, at 82,439 to 83,569 _RS00355 Position (kb) 81 82 83Strain fitness (log2 ratio) -1 0 1at 82.191 kb on - strand, within RALBFv3_RS00350at 82.199 kb on + strand, within RALBFv3_RS00350at 82.411 kb on + strandat 82.438 kb on + strandat 82.629 kb on - strand, within RALBFv3_RS00355at 82.644 kb on - strand, within RALBFv3_RS00355at 82.730 kb on + strand, within RALBFv3_RS00355at 83.088 kb on - strand, within RALBFv3_RS00355at 83.118 kb on - strand, within RALBFv3_RS00355

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
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82,191 - RALBFv3_RS00350 0.65 +0.2
82,199 + RALBFv3_RS00350 0.67 +0.1
82,411 + -0.8
82,438 + -1.7
82,629 - RALBFv3_RS00355 0.17 +0.4
82,644 - RALBFv3_RS00355 0.18 -0.2
82,730 + RALBFv3_RS00355 0.26 -0.6
83,088 - RALBFv3_RS00355 0.57 -0.2
83,118 - RALBFv3_RS00355 0.60 +0.4

Or see this region's nucleotide sequence