Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_882

Experiment: carbon source Sucrose 5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_879 and Pf1N1B4_880 are separated by 94 nucleotidesPf1N1B4_880 and Pf1N1B4_881 are separated by 211 nucleotidesPf1N1B4_881 and Pf1N1B4_882 overlap by 4 nucleotidesPf1N1B4_882 and Pf1N1B4_883 are separated by 56 nucleotidesPf1N1B4_883 and Pf1N1B4_884 are separated by 146 nucleotides Pf1N1B4_879 - Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-), at 1,004,480 to 1,005,661 _879 Pf1N1B4_880 - Putative preQ0 transporter, at 1,005,756 to 1,006,229 _880 Pf1N1B4_881 - FIG00954164: hypothetical protein, at 1,006,441 to 1,006,656 _881 Pf1N1B4_882 - carbonic anhydrase, family 3, at 1,006,653 to 1,007,177 _882 Pf1N1B4_883 - Hypothetical nudix hydrolase YeaB, at 1,007,234 to 1,007,833 _883 Pf1N1B4_884 - MutT/nudix family protein, at 1,007,980 to 1,008,531 _884 Position (kb) 1006 1007 1008Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1005.740 kb on - strandat 1005.740 kb on - strandat 1005.782 kb on + strandat 1005.866 kb on + strand, within Pf1N1B4_880at 1005.866 kb on + strand, within Pf1N1B4_880at 1005.928 kb on - strand, within Pf1N1B4_880at 1006.045 kb on + strand, within Pf1N1B4_880at 1006.045 kb on + strand, within Pf1N1B4_880at 1006.045 kb on + strand, within Pf1N1B4_880at 1006.045 kb on + strand, within Pf1N1B4_880at 1006.045 kb on + strand, within Pf1N1B4_880at 1006.045 kb on + strand, within Pf1N1B4_880at 1006.045 kb on + strand, within Pf1N1B4_880at 1006.045 kb on + strand, within Pf1N1B4_880at 1006.045 kb on + strand, within Pf1N1B4_880at 1006.046 kb on - strand, within Pf1N1B4_880at 1006.046 kb on - strand, within Pf1N1B4_880at 1006.046 kb on - strand, within Pf1N1B4_880at 1006.046 kb on - strand, within Pf1N1B4_880at 1006.046 kb on - strand, within Pf1N1B4_880at 1006.046 kb on - strand, within Pf1N1B4_880at 1006.046 kb on - strand, within Pf1N1B4_880at 1006.210 kb on + strandat 1006.241 kb on + strandat 1006.241 kb on + strandat 1006.241 kb on + strandat 1006.241 kb on + strandat 1006.242 kb on - strandat 1006.242 kb on - strandat 1006.242 kb on - strandat 1006.266 kb on + strandat 1006.267 kb on - strandat 1006.284 kb on + strandat 1006.284 kb on + strandat 1006.284 kb on + strandat 1006.285 kb on - strandat 1006.285 kb on - strandat 1006.285 kb on - strandat 1006.285 kb on - strandat 1006.288 kb on + strandat 1006.288 kb on + strandat 1006.363 kb on + strandat 1006.433 kb on + strandat 1006.434 kb on - strandat 1006.705 kb on + strandat 1006.705 kb on + strandat 1006.705 kb on + strandat 1006.706 kb on - strand, within Pf1N1B4_882at 1006.706 kb on - strand, within Pf1N1B4_882at 1006.706 kb on - strand, within Pf1N1B4_882at 1006.706 kb on - strand, within Pf1N1B4_882at 1006.706 kb on - strand, within Pf1N1B4_882at 1006.886 kb on + strand, within Pf1N1B4_882at 1006.913 kb on + strand, within Pf1N1B4_882at 1006.914 kb on - strand, within Pf1N1B4_882at 1006.914 kb on - strand, within Pf1N1B4_882at 1007.171 kb on - strandat 1007.171 kb on - strandat 1007.180 kb on + strandat 1007.180 kb on + strandat 1007.180 kb on + strandat 1007.181 kb on - strandat 1007.181 kb on - strandat 1007.245 kb on + strandat 1007.246 kb on - strandat 1007.246 kb on - strandat 1007.246 kb on - strandat 1007.286 kb on + strandat 1007.287 kb on - strandat 1007.287 kb on - strandat 1007.341 kb on - strand, within Pf1N1B4_883at 1007.509 kb on - strand, within Pf1N1B4_883at 1007.509 kb on - strand, within Pf1N1B4_883at 1007.683 kb on + strand, within Pf1N1B4_883at 1007.819 kb on + strandat 1007.819 kb on + strandat 1007.819 kb on + strandat 1007.819 kb on + strandat 1007.820 kb on - strandat 1007.820 kb on - strandat 1007.955 kb on - strandat 1007.955 kb on - strandat 1008.069 kb on + strand, within Pf1N1B4_884at 1008.069 kb on + strandat 1008.069 kb on + strand, within Pf1N1B4_884at 1008.069 kb on + strand, within Pf1N1B4_884at 1008.070 kb on - strand, within Pf1N1B4_884at 1008.080 kb on - strand, within Pf1N1B4_884at 1008.094 kb on - strand, within Pf1N1B4_884

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source Sucrose 5mM
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1,005,740 - -2.2
1,005,740 - -0.9
1,005,782 + +1.3
1,005,866 + Pf1N1B4_880 0.23 -1.6
1,005,866 + Pf1N1B4_880 0.23 +1.9
1,005,928 - Pf1N1B4_880 0.36 -1.4
1,006,045 + Pf1N1B4_880 0.61 +1.8
1,006,045 + Pf1N1B4_880 0.61 -0.9
1,006,045 + Pf1N1B4_880 0.61 -1.2
1,006,045 + Pf1N1B4_880 0.61 -0.3
1,006,045 + Pf1N1B4_880 0.61 +0.5
1,006,045 + Pf1N1B4_880 0.61 -2.1
1,006,045 + Pf1N1B4_880 0.61 -0.7
1,006,045 + Pf1N1B4_880 0.61 -2.7
1,006,045 + Pf1N1B4_880 0.61 -2.6
1,006,046 - Pf1N1B4_880 0.61 -1.0
1,006,046 - Pf1N1B4_880 0.61 +1.3
1,006,046 - Pf1N1B4_880 0.61 +0.8
1,006,046 - Pf1N1B4_880 0.61 -1.0
1,006,046 - Pf1N1B4_880 0.61 +1.9
1,006,046 - Pf1N1B4_880 0.61 +2.4
1,006,046 - Pf1N1B4_880 0.61 +0.5
1,006,210 + -3.2
1,006,241 + +1.5
1,006,241 + -1.5
1,006,241 + +1.0
1,006,241 + +0.8
1,006,242 - +0.2
1,006,242 - +0.9
1,006,242 - +1.4
1,006,266 + -1.5
1,006,267 - -2.4
1,006,284 + -1.3
1,006,284 + +0.6
1,006,284 + +1.1
1,006,285 - +2.0
1,006,285 - -0.1
1,006,285 - +1.0
1,006,285 - -0.2
1,006,288 + -0.0
1,006,288 + +0.0
1,006,363 + -3.6
1,006,433 + -1.4
1,006,434 - +0.8
1,006,705 + +1.5
1,006,705 + +0.7
1,006,705 + -1.4
1,006,706 - Pf1N1B4_882 0.10 -1.5
1,006,706 - Pf1N1B4_882 0.10 -2.3
1,006,706 - Pf1N1B4_882 0.10 -1.3
1,006,706 - Pf1N1B4_882 0.10 -0.1
1,006,706 - Pf1N1B4_882 0.10 -0.3
1,006,886 + Pf1N1B4_882 0.44 -3.6
1,006,913 + Pf1N1B4_882 0.50 -1.9
1,006,914 - Pf1N1B4_882 0.50 -1.4
1,006,914 - Pf1N1B4_882 0.50 -1.7
1,007,171 - +0.8
1,007,171 - +3.0
1,007,180 + +0.8
1,007,180 + -0.8
1,007,180 + -0.1
1,007,181 - -0.3
1,007,181 - -1.8
1,007,245 + -1.1
1,007,246 - +1.0
1,007,246 - +0.2
1,007,246 - -1.9
1,007,286 + +1.6
1,007,287 - +0.1
1,007,287 - +1.2
1,007,341 - Pf1N1B4_883 0.18 -1.9
1,007,509 - Pf1N1B4_883 0.46 -1.5
1,007,509 - Pf1N1B4_883 0.46 +0.8
1,007,683 + Pf1N1B4_883 0.75 +0.6
1,007,819 + -0.5
1,007,819 + -1.5
1,007,819 + +1.2
1,007,819 + -1.7
1,007,820 - -0.8
1,007,820 - +1.2
1,007,955 - +2.2
1,007,955 - +0.9
1,008,069 + Pf1N1B4_884 0.16 +0.5
1,008,069 + +0.9
1,008,069 + Pf1N1B4_884 0.16 +1.6
1,008,069 + Pf1N1B4_884 0.16 -0.0
1,008,070 - Pf1N1B4_884 0.16 +0.1
1,008,080 - Pf1N1B4_884 0.18 +1.9
1,008,094 - Pf1N1B4_884 0.21 -0.1

Or see this region's nucleotide sequence