Experiment: carbon source Sucrose 5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_708 and Pf1N1B4_709 are separated by 96 nucleotides Pf1N1B4_709 and Pf1N1B4_710 are separated by 6 nucleotides Pf1N1B4_710 and Pf1N1B4_711 are separated by 176 nucleotides
Pf1N1B4_708 - Chromosome initiation inhibitor, at 808,026 to 808,925
_708
Pf1N1B4_709 - FIG00953860: hypothetical protein, at 809,022 to 809,423
_709
Pf1N1B4_710 - Transporter, LysE family, at 809,430 to 810,032
_710
Pf1N1B4_711 - Superoxide dismutase [Fe] (EC 1.15.1.1), at 810,209 to 810,805
_711
Position (kb) 809
810 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 808.148 kb on + strand at 808.148 kb on + strand, within Pf1N1B4_708 at 808.148 kb on + strand, within Pf1N1B4_708 at 808.148 kb on + strand, within Pf1N1B4_708 at 808.149 kb on - strand, within Pf1N1B4_708 at 808.269 kb on + strand, within Pf1N1B4_708 at 808.269 kb on + strand, within Pf1N1B4_708 at 808.269 kb on + strand at 808.269 kb on + strand, within Pf1N1B4_708 at 808.269 kb on + strand, within Pf1N1B4_708 at 808.269 kb on + strand, within Pf1N1B4_708 at 808.269 kb on + strand, within Pf1N1B4_708 at 808.270 kb on - strand, within Pf1N1B4_708 at 808.270 kb on - strand at 808.270 kb on - strand, within Pf1N1B4_708 at 808.270 kb on - strand at 808.270 kb on - strand, within Pf1N1B4_708 at 808.270 kb on - strand, within Pf1N1B4_708 at 808.324 kb on - strand, within Pf1N1B4_708 at 808.549 kb on - strand, within Pf1N1B4_708 at 808.908 kb on + strand at 808.908 kb on + strand at 808.909 kb on - strand at 808.909 kb on - strand at 808.916 kb on - strand at 809.088 kb on + strand, within Pf1N1B4_709 at 809.088 kb on + strand, within Pf1N1B4_709 at 809.088 kb on + strand, within Pf1N1B4_709 at 809.088 kb on + strand, within Pf1N1B4_709 at 809.088 kb on + strand, within Pf1N1B4_709 at 809.089 kb on - strand, within Pf1N1B4_709 at 809.089 kb on - strand, within Pf1N1B4_709 at 809.089 kb on - strand, within Pf1N1B4_709 at 809.220 kb on + strand, within Pf1N1B4_709 at 809.221 kb on - strand, within Pf1N1B4_709 at 809.221 kb on - strand at 809.221 kb on - strand, within Pf1N1B4_709 at 809.221 kb on - strand, within Pf1N1B4_709 at 809.341 kb on - strand, within Pf1N1B4_709 at 809.341 kb on - strand at 809.393 kb on - strand at 809.421 kb on + strand at 809.429 kb on + strand at 809.429 kb on + strand at 809.430 kb on - strand at 809.430 kb on - strand at 809.430 kb on - strand at 809.442 kb on + strand at 809.442 kb on + strand at 809.442 kb on + strand at 809.442 kb on + strand at 809.442 kb on + strand at 809.442 kb on + strand at 809.669 kb on - strand, within Pf1N1B4_710 at 809.669 kb on - strand at 809.744 kb on - strand at 809.806 kb on - strand at 809.865 kb on + strand, within Pf1N1B4_710 at 809.865 kb on + strand, within Pf1N1B4_710 at 809.866 kb on - strand, within Pf1N1B4_710 at 809.866 kb on - strand, within Pf1N1B4_710 at 809.893 kb on + strand, within Pf1N1B4_710 at 809.893 kb on + strand, within Pf1N1B4_710 at 809.912 kb on - strand, within Pf1N1B4_710 at 810.017 kb on - strand at 810.036 kb on - strand at 810.059 kb on + strand at 810.102 kb on + strand at 810.102 kb on + strand at 810.102 kb on + strand at 810.102 kb on + strand at 810.102 kb on + strand at 810.103 kb on - strand at 810.103 kb on - strand at 810.103 kb on - strand at 810.103 kb on - strand at 810.130 kb on + strand at 810.130 kb on + strand at 810.130 kb on + strand at 810.196 kb on + strand at 810.196 kb on + strand at 810.196 kb on + strand at 810.196 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source Sucrose 5mM remove 808,148 + +0.8 808,148 + Pf1N1B4_708 0.14 -1.3 808,148 + Pf1N1B4_708 0.14 -2.4 808,148 + Pf1N1B4_708 0.14 -2.3 808,149 - Pf1N1B4_708 0.14 -2.0 808,269 + Pf1N1B4_708 0.27 -1.7 808,269 + Pf1N1B4_708 0.27 +0.2 808,269 + -2.0 808,269 + Pf1N1B4_708 0.27 -1.5 808,269 + Pf1N1B4_708 0.27 -1.6 808,269 + Pf1N1B4_708 0.27 +2.4 808,269 + Pf1N1B4_708 0.27 -0.6 808,270 - Pf1N1B4_708 0.27 -3.3 808,270 - +3.6 808,270 - Pf1N1B4_708 0.27 -3.0 808,270 - +0.4 808,270 - Pf1N1B4_708 0.27 +0.1 808,270 - Pf1N1B4_708 0.27 -1.2 808,324 - Pf1N1B4_708 0.33 -1.1 808,549 - Pf1N1B4_708 0.58 -1.7 808,908 + +1.6 808,908 + +0.4 808,909 - +0.7 808,909 - +0.7 808,916 - -2.1 809,088 + Pf1N1B4_709 0.16 -2.2 809,088 + Pf1N1B4_709 0.16 -1.2 809,088 + Pf1N1B4_709 0.16 -0.4 809,088 + Pf1N1B4_709 0.16 -2.1 809,088 + Pf1N1B4_709 0.16 -2.2 809,089 - Pf1N1B4_709 0.17 -1.6 809,089 - Pf1N1B4_709 0.17 -2.4 809,089 - Pf1N1B4_709 0.17 -1.7 809,220 + Pf1N1B4_709 0.49 +1.3 809,221 - Pf1N1B4_709 0.50 -0.2 809,221 - -0.7 809,221 - Pf1N1B4_709 0.50 -1.3 809,221 - Pf1N1B4_709 0.50 -1.7 809,341 - Pf1N1B4_709 0.79 +1.5 809,341 - -0.2 809,393 - -0.9 809,421 + -2.1 809,429 + -1.7 809,429 + -2.8 809,430 - -2.7 809,430 - -0.7 809,430 - -2.4 809,442 + -1.3 809,442 + -1.2 809,442 + +0.6 809,442 + -1.3 809,442 + +0.9 809,442 + -0.2 809,669 - Pf1N1B4_710 0.40 +1.8 809,669 - -1.0 809,744 - +0.4 809,806 - +0.4 809,865 + Pf1N1B4_710 0.72 -1.7 809,865 + Pf1N1B4_710 0.72 +2.8 809,866 - Pf1N1B4_710 0.72 +1.1 809,866 - Pf1N1B4_710 0.72 +0.3 809,893 + Pf1N1B4_710 0.77 -1.7 809,893 + Pf1N1B4_710 0.77 -0.1 809,912 - Pf1N1B4_710 0.80 +1.5 810,017 - +1.2 810,036 - +0.3 810,059 + +0.2 810,102 + -2.2 810,102 + +2.2 810,102 + +0.4 810,102 + -1.8 810,102 + -1.0 810,103 - -2.3 810,103 - +0.8 810,103 - +0.3 810,103 - +1.3 810,130 + -1.3 810,130 + -1.8 810,130 + -2.3 810,196 + +1.4 810,196 + +0.7 810,196 + -0.9 810,196 + +1.3
Or see this region's nucleotide sequence