Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_600

Experiment: carbon source Sucrose 5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_598 and Pf1N1B4_599 overlap by 11 nucleotidesPf1N1B4_599 and Pf1N1B4_600 are separated by 177 nucleotidesPf1N1B4_600 and Pf1N1B4_601 overlap by 4 nucleotides Pf1N1B4_598 - Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster, at 690,581 to 692,050 _598 Pf1N1B4_599 - DNA-binding response regulator GltR, controls specific porins for the entry of glucose, at 692,040 to 692,771 _599 Pf1N1B4_600 - Glucokinase (EC 2.7.1.2), at 692,949 to 693,908 _600 Pf1N1B4_601 - Phosphogluconate dehydratase (EC 4.2.1.12), at 693,905 to 695,731 _601 Position (kb) 692 693 694Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 692.081 kb on - strandat 692.458 kb on + strand, within Pf1N1B4_599at 692.701 kb on + strandat 692.701 kb on + strandat 692.701 kb on + strandat 692.701 kb on + strandat 692.701 kb on + strandat 692.702 kb on - strandat 692.702 kb on - strandat 692.702 kb on - strandat 692.702 kb on - strandat 692.702 kb on - strandat 692.722 kb on - strandat 692.722 kb on - strandat 692.807 kb on + strandat 692.807 kb on + strandat 692.807 kb on + strandat 692.807 kb on + strandat 692.807 kb on + strandat 692.808 kb on - strandat 692.808 kb on - strandat 692.814 kb on + strandat 692.814 kb on + strandat 692.828 kb on - strandat 692.828 kb on - strandat 692.844 kb on + strandat 692.844 kb on + strandat 692.845 kb on - strandat 692.845 kb on - strandat 693.040 kb on + strandat 693.133 kb on + strand, within Pf1N1B4_600at 693.133 kb on + strandat 693.133 kb on + strandat 693.133 kb on + strand, within Pf1N1B4_600at 693.133 kb on + strandat 693.133 kb on + strand, within Pf1N1B4_600at 693.133 kb on + strand, within Pf1N1B4_600at 693.134 kb on - strand, within Pf1N1B4_600at 693.311 kb on - strand, within Pf1N1B4_600at 693.375 kb on + strand, within Pf1N1B4_600at 693.375 kb on + strand, within Pf1N1B4_600at 693.375 kb on + strand, within Pf1N1B4_600at 693.376 kb on - strand, within Pf1N1B4_600at 693.376 kb on - strand, within Pf1N1B4_600at 693.376 kb on - strand, within Pf1N1B4_600at 693.376 kb on - strand, within Pf1N1B4_600at 693.376 kb on - strand, within Pf1N1B4_600at 693.376 kb on - strand, within Pf1N1B4_600at 693.376 kb on - strand, within Pf1N1B4_600at 693.376 kb on - strand, within Pf1N1B4_600at 693.376 kb on - strand, within Pf1N1B4_600at 693.376 kb on - strand, within Pf1N1B4_600at 693.376 kb on - strand, within Pf1N1B4_600at 693.376 kb on - strand, within Pf1N1B4_600at 693.376 kb on - strand, within Pf1N1B4_600at 693.376 kb on - strand, within Pf1N1B4_600at 693.775 kb on + strand, within Pf1N1B4_600at 693.911 kb on - strandat 693.911 kb on - strandat 693.911 kb on - strandat 693.911 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source Sucrose 5mM
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692,081 - -2.3
692,458 + Pf1N1B4_599 0.57 -0.3
692,701 + -2.6
692,701 + -0.2
692,701 + -2.7
692,701 + +1.6
692,701 + -0.8
692,702 - -1.6
692,702 - +0.3
692,702 - +2.2
692,702 - +0.2
692,702 - -0.7
692,722 - -0.7
692,722 - -1.6
692,807 + +0.6
692,807 + +0.0
692,807 + -2.7
692,807 + -2.5
692,807 + -1.7
692,808 - +0.3
692,808 - -1.5
692,814 + +0.5
692,814 + +1.8
692,828 - +2.1
692,828 - -2.1
692,844 + +0.2
692,844 + +1.5
692,845 - -0.6
692,845 - -0.7
693,040 + -1.0
693,133 + Pf1N1B4_600 0.19 -1.7
693,133 + -1.4
693,133 + -0.7
693,133 + Pf1N1B4_600 0.19 -3.5
693,133 + -0.8
693,133 + Pf1N1B4_600 0.19 -2.5
693,133 + Pf1N1B4_600 0.19 -2.4
693,134 - Pf1N1B4_600 0.19 -0.8
693,311 - Pf1N1B4_600 0.38 -5.0
693,375 + Pf1N1B4_600 0.44 -2.5
693,375 + Pf1N1B4_600 0.44 -1.1
693,375 + Pf1N1B4_600 0.44 -1.9
693,376 - Pf1N1B4_600 0.44 -2.2
693,376 - Pf1N1B4_600 0.44 -1.0
693,376 - Pf1N1B4_600 0.44 -2.7
693,376 - Pf1N1B4_600 0.44 -2.8
693,376 - Pf1N1B4_600 0.44 -2.4
693,376 - Pf1N1B4_600 0.44 +0.8
693,376 - Pf1N1B4_600 0.44 -1.7
693,376 - Pf1N1B4_600 0.44 -2.9
693,376 - Pf1N1B4_600 0.44 +0.8
693,376 - Pf1N1B4_600 0.44 -2.7
693,376 - Pf1N1B4_600 0.44 -1.0
693,376 - Pf1N1B4_600 0.44 -1.4
693,376 - Pf1N1B4_600 0.44 -3.4
693,376 - Pf1N1B4_600 0.44 -3.8
693,775 + Pf1N1B4_600 0.86 -1.8
693,911 - -1.7
693,911 - -1.4
693,911 - -3.4
693,911 - +0.7

Or see this region's nucleotide sequence