Experiment: carbon source Sucrose 5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5953 and Pf1N1B4_5954 are separated by 204 nucleotides Pf1N1B4_5954 and Pf1N1B4_5955 are separated by 411 nucleotides
Pf1N1B4_5953 - Universal stress protein family 5, at 401,375 to 402,277
_5953
Pf1N1B4_5954 - hypothetical protein, at 402,482 to 403,000
_5954
Pf1N1B4_5955 - Permease of the major facilitator superfamily, at 403,412 to 404,641
_5955
Position (kb) 402
403
404 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 401.583 kb on + strand, within Pf1N1B4_5953 at 401.678 kb on + strand, within Pf1N1B4_5953 at 401.680 kb on + strand, within Pf1N1B4_5953 at 401.680 kb on + strand, within Pf1N1B4_5953 at 401.680 kb on + strand, within Pf1N1B4_5953 at 401.680 kb on + strand, within Pf1N1B4_5953 at 401.680 kb on + strand, within Pf1N1B4_5953 at 401.680 kb on + strand, within Pf1N1B4_5953 at 401.680 kb on + strand, within Pf1N1B4_5953 at 401.681 kb on - strand, within Pf1N1B4_5953 at 401.681 kb on - strand, within Pf1N1B4_5953 at 401.681 kb on - strand, within Pf1N1B4_5953 at 401.681 kb on - strand, within Pf1N1B4_5953 at 401.681 kb on - strand, within Pf1N1B4_5953 at 401.681 kb on - strand, within Pf1N1B4_5953 at 401.681 kb on - strand, within Pf1N1B4_5953 at 401.681 kb on - strand, within Pf1N1B4_5953 at 401.681 kb on - strand, within Pf1N1B4_5953 at 401.681 kb on - strand, within Pf1N1B4_5953 at 401.681 kb on - strand, within Pf1N1B4_5953 at 401.681 kb on - strand, within Pf1N1B4_5953 at 401.693 kb on + strand at 401.694 kb on - strand, within Pf1N1B4_5953 at 401.700 kb on + strand, within Pf1N1B4_5953 at 401.700 kb on + strand, within Pf1N1B4_5953 at 401.706 kb on + strand at 401.707 kb on - strand, within Pf1N1B4_5953 at 402.170 kb on - strand at 402.251 kb on + strand at 402.252 kb on - strand at 402.252 kb on - strand at 402.252 kb on - strand at 402.377 kb on + strand at 402.386 kb on + strand at 402.386 kb on + strand at 402.386 kb on + strand at 402.387 kb on - strand at 402.483 kb on + strand at 402.483 kb on + strand at 402.484 kb on - strand at 402.496 kb on - strand at 402.623 kb on + strand, within Pf1N1B4_5954 at 402.705 kb on - strand, within Pf1N1B4_5954 at 402.722 kb on + strand, within Pf1N1B4_5954 at 402.722 kb on + strand, within Pf1N1B4_5954 at 402.722 kb on + strand at 402.722 kb on + strand, within Pf1N1B4_5954 at 402.723 kb on - strand, within Pf1N1B4_5954 at 402.774 kb on + strand, within Pf1N1B4_5954 at 402.925 kb on - strand, within Pf1N1B4_5954 at 402.970 kb on - strand at 403.003 kb on - strand at 403.578 kb on + strand, within Pf1N1B4_5955 at 403.578 kb on + strand, within Pf1N1B4_5955 at 403.578 kb on + strand, within Pf1N1B4_5955 at 403.920 kb on + strand, within Pf1N1B4_5955 at 403.920 kb on + strand, within Pf1N1B4_5955
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source Sucrose 5mM remove 401,583 + Pf1N1B4_5953 0.23 -0.5 401,678 + Pf1N1B4_5953 0.34 +1.9 401,680 + Pf1N1B4_5953 0.34 -0.0 401,680 + Pf1N1B4_5953 0.34 -0.8 401,680 + Pf1N1B4_5953 0.34 +1.0 401,680 + Pf1N1B4_5953 0.34 -0.2 401,680 + Pf1N1B4_5953 0.34 -2.1 401,680 + Pf1N1B4_5953 0.34 -0.4 401,680 + Pf1N1B4_5953 0.34 +0.2 401,681 - Pf1N1B4_5953 0.34 -0.2 401,681 - Pf1N1B4_5953 0.34 +2.0 401,681 - Pf1N1B4_5953 0.34 -1.2 401,681 - Pf1N1B4_5953 0.34 +1.9 401,681 - Pf1N1B4_5953 0.34 -1.4 401,681 - Pf1N1B4_5953 0.34 +1.7 401,681 - Pf1N1B4_5953 0.34 -1.7 401,681 - Pf1N1B4_5953 0.34 -2.9 401,681 - Pf1N1B4_5953 0.34 +1.0 401,681 - Pf1N1B4_5953 0.34 -0.4 401,681 - Pf1N1B4_5953 0.34 -2.2 401,681 - Pf1N1B4_5953 0.34 -1.7 401,693 + -0.8 401,694 - Pf1N1B4_5953 0.35 +0.0 401,700 + Pf1N1B4_5953 0.36 -0.6 401,700 + Pf1N1B4_5953 0.36 +0.2 401,706 + -0.8 401,707 - Pf1N1B4_5953 0.37 +0.8 402,170 - +2.2 402,251 + +1.0 402,252 - +1.7 402,252 - +0.5 402,252 - -0.2 402,377 + -1.5 402,386 + +0.6 402,386 + -1.0 402,386 + -1.2 402,387 - -0.3 402,483 + -0.8 402,483 + +0.4 402,484 - -2.1 402,496 - -0.8 402,623 + Pf1N1B4_5954 0.27 +1.9 402,705 - Pf1N1B4_5954 0.43 +1.4 402,722 + Pf1N1B4_5954 0.46 +0.2 402,722 + Pf1N1B4_5954 0.46 +1.5 402,722 + +1.3 402,722 + Pf1N1B4_5954 0.46 +0.5 402,723 - Pf1N1B4_5954 0.46 +1.7 402,774 + Pf1N1B4_5954 0.56 -0.8 402,925 - Pf1N1B4_5954 0.85 -1.7 402,970 - -1.4 403,003 - +1.6 403,578 + Pf1N1B4_5955 0.13 -1.7 403,578 + Pf1N1B4_5955 0.13 +0.5 403,578 + Pf1N1B4_5955 0.13 -1.8 403,920 + Pf1N1B4_5955 0.41 +1.2 403,920 + Pf1N1B4_5955 0.41 -1.5
Or see this region's nucleotide sequence