Experiment: carbon source Sucrose 5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5949 and Pf1N1B4_5950 overlap by 4 nucleotides Pf1N1B4_5950 and Pf1N1B4_5951 are separated by 157 nucleotides Pf1N1B4_5951 and Pf1N1B4_5952 are separated by 534 nucleotides Pf1N1B4_5952 and Pf1N1B4_5953 overlap by 7 nucleotides
Pf1N1B4_5949 - Phosphomannomutase (EC 5.4.2.8), at 398,703 to 399,134
_5949
Pf1N1B4_5950 - Transcriptional activator RfaH, at 399,131 to 399,637
_5950
Pf1N1B4_5951 - Undecaprenyl-diphosphatase (EC 3.6.1.27), at 399,795 to 400,631
_5951
Pf1N1B4_5952 - hypothetical protein, at 401,166 to 401,381
_5952
Pf1N1B4_5953 - Universal stress protein family 5, at 401,375 to 402,277
_5953
Position (kb)
399
400
401 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 399.635 kb on + strand at 399.701 kb on - strand at 399.796 kb on + strand at 399.896 kb on - strand, within Pf1N1B4_5951 at 399.899 kb on + strand, within Pf1N1B4_5951 at 399.900 kb on - strand, within Pf1N1B4_5951 at 399.900 kb on - strand, within Pf1N1B4_5951 at 399.900 kb on - strand, within Pf1N1B4_5951 at 399.900 kb on - strand, within Pf1N1B4_5951 at 399.900 kb on - strand, within Pf1N1B4_5951 at 399.900 kb on - strand, within Pf1N1B4_5951 at 399.900 kb on - strand, within Pf1N1B4_5951 at 400.013 kb on - strand, within Pf1N1B4_5951 at 400.016 kb on + strand, within Pf1N1B4_5951 at 400.016 kb on + strand, within Pf1N1B4_5951 at 400.016 kb on + strand, within Pf1N1B4_5951 at 400.017 kb on - strand, within Pf1N1B4_5951 at 400.017 kb on - strand, within Pf1N1B4_5951 at 400.017 kb on - strand, within Pf1N1B4_5951 at 400.017 kb on - strand, within Pf1N1B4_5951 at 400.017 kb on - strand, within Pf1N1B4_5951 at 400.017 kb on - strand, within Pf1N1B4_5951 at 400.019 kb on - strand, within Pf1N1B4_5951 at 400.019 kb on - strand, within Pf1N1B4_5951 at 400.028 kb on - strand at 400.270 kb on - strand, within Pf1N1B4_5951 at 400.310 kb on - strand, within Pf1N1B4_5951 at 400.466 kb on + strand, within Pf1N1B4_5951 at 400.597 kb on - strand at 400.597 kb on - strand at 400.606 kb on - strand at 400.763 kb on + strand at 400.764 kb on - strand at 400.764 kb on - strand at 400.873 kb on - strand at 400.931 kb on + strand at 400.978 kb on + strand at 400.979 kb on - strand at 400.981 kb on + strand at 400.981 kb on + strand at 401.017 kb on - strand at 401.091 kb on - strand at 401.129 kb on + strand at 401.129 kb on + strand at 401.131 kb on + strand at 401.131 kb on + strand at 401.131 kb on + strand at 401.132 kb on - strand at 401.132 kb on - strand at 401.234 kb on + strand, within Pf1N1B4_5952 at 401.360 kb on + strand at 401.361 kb on - strand at 401.361 kb on - strand at 401.583 kb on + strand, within Pf1N1B4_5953
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source Sucrose 5mM remove 399,635 + +2.0 399,701 - -1.5 399,796 + -0.3 399,896 - Pf1N1B4_5951 0.12 +0.6 399,899 + Pf1N1B4_5951 0.12 +0.8 399,900 - Pf1N1B4_5951 0.13 +1.3 399,900 - Pf1N1B4_5951 0.13 +1.0 399,900 - Pf1N1B4_5951 0.13 +0.9 399,900 - Pf1N1B4_5951 0.13 -1.7 399,900 - Pf1N1B4_5951 0.13 +2.1 399,900 - Pf1N1B4_5951 0.13 +0.6 399,900 - Pf1N1B4_5951 0.13 -0.2 400,013 - Pf1N1B4_5951 0.26 +2.0 400,016 + Pf1N1B4_5951 0.26 +0.6 400,016 + Pf1N1B4_5951 0.26 +1.8 400,016 + Pf1N1B4_5951 0.26 -1.1 400,017 - Pf1N1B4_5951 0.27 +0.7 400,017 - Pf1N1B4_5951 0.27 -0.6 400,017 - Pf1N1B4_5951 0.27 +0.8 400,017 - Pf1N1B4_5951 0.27 -1.3 400,017 - Pf1N1B4_5951 0.27 +0.7 400,017 - Pf1N1B4_5951 0.27 +1.0 400,019 - Pf1N1B4_5951 0.27 +1.2 400,019 - Pf1N1B4_5951 0.27 +1.6 400,028 - -0.5 400,270 - Pf1N1B4_5951 0.57 -2.1 400,310 - Pf1N1B4_5951 0.62 +0.6 400,466 + Pf1N1B4_5951 0.80 +0.3 400,597 - +0.5 400,597 - -1.9 400,606 - +1.0 400,763 + +0.8 400,764 - +0.2 400,764 - +2.0 400,873 - +0.6 400,931 + -0.5 400,978 + -2.6 400,979 - -2.0 400,981 + -0.5 400,981 + -1.0 401,017 - -0.5 401,091 - +1.2 401,129 + +0.3 401,129 + +1.9 401,131 + -1.3 401,131 + +0.8 401,131 + -1.0 401,132 - -1.1 401,132 - +0.2 401,234 + Pf1N1B4_5952 0.31 +1.7 401,360 + -1.9 401,361 - +0.3 401,361 - -1.0 401,583 + Pf1N1B4_5953 0.23 -0.5
Or see this region's nucleotide sequence