Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5951

Experiment: carbon source Sucrose 5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5949 and Pf1N1B4_5950 overlap by 4 nucleotidesPf1N1B4_5950 and Pf1N1B4_5951 are separated by 157 nucleotidesPf1N1B4_5951 and Pf1N1B4_5952 are separated by 534 nucleotidesPf1N1B4_5952 and Pf1N1B4_5953 overlap by 7 nucleotides Pf1N1B4_5949 - Phosphomannomutase (EC 5.4.2.8), at 398,703 to 399,134 _5949 Pf1N1B4_5950 - Transcriptional activator RfaH, at 399,131 to 399,637 _5950 Pf1N1B4_5951 - Undecaprenyl-diphosphatase (EC 3.6.1.27), at 399,795 to 400,631 _5951 Pf1N1B4_5952 - hypothetical protein, at 401,166 to 401,381 _5952 Pf1N1B4_5953 - Universal stress protein family 5, at 401,375 to 402,277 _5953 Position (kb) 399 400 401Strain fitness (log2 ratio) -2 -1 0 1 2at 399.635 kb on + strandat 399.701 kb on - strandat 399.796 kb on + strandat 399.896 kb on - strand, within Pf1N1B4_5951at 399.899 kb on + strand, within Pf1N1B4_5951at 399.900 kb on - strand, within Pf1N1B4_5951at 399.900 kb on - strand, within Pf1N1B4_5951at 399.900 kb on - strand, within Pf1N1B4_5951at 399.900 kb on - strand, within Pf1N1B4_5951at 399.900 kb on - strand, within Pf1N1B4_5951at 399.900 kb on - strand, within Pf1N1B4_5951at 399.900 kb on - strand, within Pf1N1B4_5951at 400.013 kb on - strand, within Pf1N1B4_5951at 400.016 kb on + strand, within Pf1N1B4_5951at 400.016 kb on + strand, within Pf1N1B4_5951at 400.016 kb on + strand, within Pf1N1B4_5951at 400.017 kb on - strand, within Pf1N1B4_5951at 400.017 kb on - strand, within Pf1N1B4_5951at 400.017 kb on - strand, within Pf1N1B4_5951at 400.017 kb on - strand, within Pf1N1B4_5951at 400.017 kb on - strand, within Pf1N1B4_5951at 400.017 kb on - strand, within Pf1N1B4_5951at 400.019 kb on - strand, within Pf1N1B4_5951at 400.019 kb on - strand, within Pf1N1B4_5951at 400.028 kb on - strandat 400.270 kb on - strand, within Pf1N1B4_5951at 400.310 kb on - strand, within Pf1N1B4_5951at 400.466 kb on + strand, within Pf1N1B4_5951at 400.597 kb on - strandat 400.597 kb on - strandat 400.606 kb on - strandat 400.763 kb on + strandat 400.764 kb on - strandat 400.764 kb on - strandat 400.873 kb on - strandat 400.931 kb on + strandat 400.978 kb on + strandat 400.979 kb on - strandat 400.981 kb on + strandat 400.981 kb on + strandat 401.017 kb on - strandat 401.091 kb on - strandat 401.129 kb on + strandat 401.129 kb on + strandat 401.131 kb on + strandat 401.131 kb on + strandat 401.131 kb on + strandat 401.132 kb on - strandat 401.132 kb on - strandat 401.234 kb on + strand, within Pf1N1B4_5952at 401.360 kb on + strandat 401.361 kb on - strandat 401.361 kb on - strandat 401.583 kb on + strand, within Pf1N1B4_5953

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source Sucrose 5mM
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399,635 + +2.0
399,701 - -1.5
399,796 + -0.3
399,896 - Pf1N1B4_5951 0.12 +0.6
399,899 + Pf1N1B4_5951 0.12 +0.8
399,900 - Pf1N1B4_5951 0.13 +1.3
399,900 - Pf1N1B4_5951 0.13 +1.0
399,900 - Pf1N1B4_5951 0.13 +0.9
399,900 - Pf1N1B4_5951 0.13 -1.7
399,900 - Pf1N1B4_5951 0.13 +2.1
399,900 - Pf1N1B4_5951 0.13 +0.6
399,900 - Pf1N1B4_5951 0.13 -0.2
400,013 - Pf1N1B4_5951 0.26 +2.0
400,016 + Pf1N1B4_5951 0.26 +0.6
400,016 + Pf1N1B4_5951 0.26 +1.8
400,016 + Pf1N1B4_5951 0.26 -1.1
400,017 - Pf1N1B4_5951 0.27 +0.7
400,017 - Pf1N1B4_5951 0.27 -0.6
400,017 - Pf1N1B4_5951 0.27 +0.8
400,017 - Pf1N1B4_5951 0.27 -1.3
400,017 - Pf1N1B4_5951 0.27 +0.7
400,017 - Pf1N1B4_5951 0.27 +1.0
400,019 - Pf1N1B4_5951 0.27 +1.2
400,019 - Pf1N1B4_5951 0.27 +1.6
400,028 - -0.5
400,270 - Pf1N1B4_5951 0.57 -2.1
400,310 - Pf1N1B4_5951 0.62 +0.6
400,466 + Pf1N1B4_5951 0.80 +0.3
400,597 - +0.5
400,597 - -1.9
400,606 - +1.0
400,763 + +0.8
400,764 - +0.2
400,764 - +2.0
400,873 - +0.6
400,931 + -0.5
400,978 + -2.6
400,979 - -2.0
400,981 + -0.5
400,981 + -1.0
401,017 - -0.5
401,091 - +1.2
401,129 + +0.3
401,129 + +1.9
401,131 + -1.3
401,131 + +0.8
401,131 + -1.0
401,132 - -1.1
401,132 - +0.2
401,234 + Pf1N1B4_5952 0.31 +1.7
401,360 + -1.9
401,361 - +0.3
401,361 - -1.0
401,583 + Pf1N1B4_5953 0.23 -0.5

Or see this region's nucleotide sequence