Experiment: carbon source Sucrose 5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5716 and Pf1N1B4_5717 are separated by 159 nucleotides Pf1N1B4_5717 and Pf1N1B4_5718 are separated by 100 nucleotides Pf1N1B4_5718 and Pf1N1B4_5719 are separated by 354 nucleotides
Pf1N1B4_5716 - Acriflavin resistance protein, at 157,751 to 160,846
_5716
Pf1N1B4_5717 - hypothetical protein, at 161,006 to 161,122
_5717
Pf1N1B4_5718 - Transcriptional regulator, Cro/CI family, at 161,223 to 162,014
_5718
Pf1N1B4_5719 - hypothetical protein, at 162,369 to 163,043
_5719
Position (kb) 161
162
163 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 160.369 kb on + strand, within Pf1N1B4_5716 at 160.369 kb on + strand, within Pf1N1B4_5716 at 160.369 kb on + strand, within Pf1N1B4_5716 at 160.369 kb on + strand at 160.369 kb on + strand, within Pf1N1B4_5716 at 160.369 kb on + strand, within Pf1N1B4_5716 at 160.370 kb on - strand, within Pf1N1B4_5716 at 160.370 kb on - strand, within Pf1N1B4_5716 at 160.370 kb on - strand, within Pf1N1B4_5716 at 160.370 kb on - strand, within Pf1N1B4_5716 at 160.370 kb on - strand, within Pf1N1B4_5716 at 160.763 kb on + strand at 160.763 kb on + strand at 160.763 kb on + strand at 160.764 kb on - strand at 160.882 kb on + strand at 160.882 kb on + strand at 160.883 kb on - strand at 160.885 kb on + strand at 160.885 kb on + strand at 160.885 kb on + strand at 160.885 kb on + strand at 160.885 kb on + strand at 160.886 kb on - strand at 160.886 kb on - strand at 160.886 kb on - strand at 160.886 kb on - strand at 160.886 kb on - strand at 161.172 kb on - strand at 161.283 kb on - strand at 161.283 kb on - strand at 161.287 kb on - strand at 161.530 kb on + strand, within Pf1N1B4_5718 at 161.530 kb on + strand at 161.589 kb on + strand, within Pf1N1B4_5718 at 161.589 kb on + strand, within Pf1N1B4_5718 at 161.696 kb on + strand, within Pf1N1B4_5718 at 161.832 kb on + strand, within Pf1N1B4_5718 at 161.832 kb on + strand, within Pf1N1B4_5718 at 161.833 kb on - strand at 161.937 kb on + strand at 161.937 kb on + strand at 161.937 kb on + strand at 161.938 kb on - strand at 162.053 kb on + strand at 162.131 kb on - strand at 162.141 kb on + strand at 162.141 kb on + strand at 162.141 kb on + strand at 162.190 kb on + strand at 162.190 kb on + strand at 162.190 kb on + strand at 162.298 kb on + strand at 162.298 kb on + strand at 162.304 kb on + strand at 162.305 kb on - strand at 162.305 kb on - strand at 162.355 kb on + strand at 162.390 kb on + strand at 162.390 kb on + strand at 162.390 kb on + strand at 162.391 kb on - strand at 162.413 kb on + strand at 162.413 kb on + strand at 162.759 kb on + strand, within Pf1N1B4_5719 at 162.760 kb on - strand, within Pf1N1B4_5719 at 162.876 kb on - strand, within Pf1N1B4_5719 at 162.957 kb on + strand, within Pf1N1B4_5719 at 162.958 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source Sucrose 5mM remove 160,369 + Pf1N1B4_5716 0.85 -3.2 160,369 + Pf1N1B4_5716 0.85 -0.3 160,369 + Pf1N1B4_5716 0.85 +0.4 160,369 + -1.9 160,369 + Pf1N1B4_5716 0.85 -0.4 160,369 + Pf1N1B4_5716 0.85 +0.1 160,370 - Pf1N1B4_5716 0.85 -1.6 160,370 - Pf1N1B4_5716 0.85 +0.9 160,370 - Pf1N1B4_5716 0.85 +0.3 160,370 - Pf1N1B4_5716 0.85 -0.0 160,370 - Pf1N1B4_5716 0.85 -1.3 160,763 + +1.5 160,763 + -0.2 160,763 + +0.2 160,764 - +0.7 160,882 + -2.1 160,882 + +1.6 160,883 - -0.1 160,885 + +1.4 160,885 + +1.2 160,885 + -1.8 160,885 + +1.2 160,885 + -0.9 160,886 - -2.6 160,886 - -2.1 160,886 - +0.8 160,886 - +1.4 160,886 - -2.3 161,172 - -2.6 161,283 - +0.0 161,283 - +0.3 161,287 - -0.3 161,530 + Pf1N1B4_5718 0.39 -1.9 161,530 + -2.0 161,589 + Pf1N1B4_5718 0.46 +1.5 161,589 + Pf1N1B4_5718 0.46 -2.3 161,696 + Pf1N1B4_5718 0.60 +1.7 161,832 + Pf1N1B4_5718 0.77 +0.4 161,832 + Pf1N1B4_5718 0.77 +2.3 161,833 - -1.0 161,937 + -1.0 161,937 + -2.1 161,937 + +0.7 161,938 - -2.4 162,053 + -1.3 162,131 - -1.2 162,141 + +1.1 162,141 + -0.6 162,141 + +0.8 162,190 + -2.1 162,190 + -2.4 162,190 + -3.3 162,298 + -2.7 162,298 + -0.5 162,304 + +2.1 162,305 - -3.1 162,305 - -0.4 162,355 + -0.8 162,390 + +1.0 162,390 + -1.4 162,390 + -2.0 162,391 - -0.7 162,413 + +0.9 162,413 + +0.4 162,759 + Pf1N1B4_5719 0.58 -3.4 162,760 - Pf1N1B4_5719 0.58 +0.4 162,876 - Pf1N1B4_5719 0.75 -1.7 162,957 + Pf1N1B4_5719 0.87 -1.3 162,958 - +0.7
Or see this region's nucleotide sequence