Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_545

Experiment: carbon source Sucrose 5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_544 and Pf1N1B4_545 are separated by 105 nucleotidesPf1N1B4_545 and Pf1N1B4_546 are separated by 387 nucleotides Pf1N1B4_544 - Small-conductance mechanosensitive channel, at 641,490 to 642,788 _544 Pf1N1B4_545 - MadN protein, at 642,894 to 643,760 _545 Pf1N1B4_546 - FMN-dependent NADH-azoreductase, at 644,148 to 644,747 _546 Position (kb) 642 643 644Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 642.378 kb on + strand, within Pf1N1B4_544at 642.501 kb on + strandat 642.502 kb on - strand, within Pf1N1B4_544at 642.591 kb on + strand, within Pf1N1B4_544at 642.591 kb on + strand, within Pf1N1B4_544at 642.592 kb on - strand, within Pf1N1B4_544at 642.786 kb on + strandat 642.786 kb on + strandat 642.786 kb on + strandat 642.786 kb on + strandat 642.786 kb on + strandat 642.787 kb on - strandat 642.787 kb on - strandat 642.787 kb on - strandat 642.787 kb on - strandat 642.787 kb on - strandat 642.787 kb on - strandat 642.787 kb on - strandat 642.787 kb on - strandat 642.907 kb on - strandat 642.907 kb on - strandat 642.932 kb on + strandat 643.099 kb on + strand, within Pf1N1B4_545at 643.228 kb on + strand, within Pf1N1B4_545at 643.228 kb on + strand, within Pf1N1B4_545at 643.228 kb on + strand, within Pf1N1B4_545at 643.229 kb on - strand, within Pf1N1B4_545at 643.229 kb on - strand, within Pf1N1B4_545at 643.229 kb on - strand, within Pf1N1B4_545at 643.229 kb on - strand, within Pf1N1B4_545at 643.229 kb on - strand, within Pf1N1B4_545at 643.235 kb on - strand, within Pf1N1B4_545at 643.291 kb on + strand, within Pf1N1B4_545at 643.291 kb on + strand, within Pf1N1B4_545at 643.292 kb on - strand, within Pf1N1B4_545at 643.534 kb on + strand, within Pf1N1B4_545at 643.547 kb on - strand, within Pf1N1B4_545at 643.547 kb on - strand, within Pf1N1B4_545at 643.547 kb on - strand, within Pf1N1B4_545at 643.547 kb on - strandat 643.675 kb on + strandat 643.676 kb on - strandat 643.676 kb on - strandat 643.700 kb on - strandat 643.700 kb on - strandat 643.749 kb on + strandat 643.750 kb on - strandat 643.824 kb on + strandat 643.824 kb on + strandat 643.824 kb on + strandat 643.824 kb on + strandat 643.824 kb on + strandat 643.825 kb on - strandat 643.825 kb on - strandat 643.828 kb on - strandat 643.828 kb on - strandat 643.912 kb on + strandat 643.919 kb on + strandat 643.919 kb on + strandat 643.919 kb on + strandat 643.976 kb on + strandat 643.977 kb on - strandat 643.977 kb on - strandat 643.977 kb on - strandat 644.115 kb on - strandat 644.115 kb on - strandat 644.130 kb on + strandat 644.131 kb on - strandat 644.281 kb on + strand, within Pf1N1B4_546at 644.281 kb on + strand, within Pf1N1B4_546at 644.281 kb on + strand, within Pf1N1B4_546at 644.281 kb on + strand, within Pf1N1B4_546at 644.282 kb on - strand, within Pf1N1B4_546at 644.282 kb on - strand, within Pf1N1B4_546at 644.282 kb on - strand, within Pf1N1B4_546at 644.282 kb on - strand, within Pf1N1B4_546at 644.314 kb on + strand, within Pf1N1B4_546at 644.315 kb on - strand, within Pf1N1B4_546at 644.315 kb on - strand, within Pf1N1B4_546at 644.341 kb on + strand, within Pf1N1B4_546at 644.341 kb on + strand, within Pf1N1B4_546at 644.342 kb on - strand, within Pf1N1B4_546at 644.342 kb on - strand, within Pf1N1B4_546at 644.342 kb on - strand, within Pf1N1B4_546at 644.386 kb on + strand, within Pf1N1B4_546at 644.386 kb on + strand, within Pf1N1B4_546at 644.387 kb on - strand, within Pf1N1B4_546at 644.387 kb on - strand, within Pf1N1B4_546at 644.458 kb on + strand, within Pf1N1B4_546at 644.459 kb on - strand, within Pf1N1B4_546at 644.459 kb on - strand, within Pf1N1B4_546at 644.476 kb on - strand, within Pf1N1B4_546at 644.481 kb on + strand, within Pf1N1B4_546at 644.481 kb on + strand, within Pf1N1B4_546at 644.481 kb on + strand, within Pf1N1B4_546at 644.482 kb on - strand, within Pf1N1B4_546at 644.615 kb on + strand, within Pf1N1B4_546at 644.615 kb on + strand, within Pf1N1B4_546at 644.615 kb on + strand, within Pf1N1B4_546at 644.615 kb on + strand, within Pf1N1B4_546at 644.615 kb on + strand, within Pf1N1B4_546at 644.615 kb on + strand, within Pf1N1B4_546at 644.615 kb on + strand, within Pf1N1B4_546at 644.615 kb on + strand, within Pf1N1B4_546at 644.616 kb on - strandat 644.616 kb on - strand, within Pf1N1B4_546at 644.616 kb on - strand, within Pf1N1B4_546at 644.616 kb on - strand, within Pf1N1B4_546at 644.616 kb on - strand, within Pf1N1B4_546at 644.616 kb on - strand, within Pf1N1B4_546at 644.754 kb on + strandat 644.754 kb on + strandat 644.754 kb on + strandat 644.754 kb on + strandat 644.754 kb on + strandat 644.754 kb on + strandat 644.754 kb on + strandat 644.754 kb on + strandat 644.754 kb on + strandat 644.755 kb on - strandat 644.755 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source Sucrose 5mM
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642,378 + Pf1N1B4_544 0.68 +1.3
642,501 + -0.7
642,502 - Pf1N1B4_544 0.78 +0.3
642,591 + Pf1N1B4_544 0.85 -2.3
642,591 + Pf1N1B4_544 0.85 +0.5
642,592 - Pf1N1B4_544 0.85 +1.1
642,786 + +0.5
642,786 + +0.3
642,786 + -1.8
642,786 + -1.3
642,786 + +2.1
642,787 - -2.3
642,787 - -1.3
642,787 - -1.6
642,787 - -2.0
642,787 - -1.8
642,787 - +2.1
642,787 - -1.8
642,787 - +1.0
642,907 - -2.9
642,907 - +1.1
642,932 + -1.1
643,099 + Pf1N1B4_545 0.24 -0.7
643,228 + Pf1N1B4_545 0.39 -3.3
643,228 + Pf1N1B4_545 0.39 +1.1
643,228 + Pf1N1B4_545 0.39 +2.7
643,229 - Pf1N1B4_545 0.39 +2.0
643,229 - Pf1N1B4_545 0.39 -1.7
643,229 - Pf1N1B4_545 0.39 -0.6
643,229 - Pf1N1B4_545 0.39 +2.2
643,229 - Pf1N1B4_545 0.39 +1.3
643,235 - Pf1N1B4_545 0.39 +0.2
643,291 + Pf1N1B4_545 0.46 +0.8
643,291 + Pf1N1B4_545 0.46 -1.1
643,292 - Pf1N1B4_545 0.46 +0.3
643,534 + Pf1N1B4_545 0.74 +1.9
643,547 - Pf1N1B4_545 0.75 +2.7
643,547 - Pf1N1B4_545 0.75 +1.2
643,547 - Pf1N1B4_545 0.75 +0.4
643,547 - +1.3
643,675 + +1.0
643,676 - +0.5
643,676 - +0.6
643,700 - -2.7
643,700 - +1.8
643,749 + -1.5
643,750 - -0.9
643,824 + -0.4
643,824 + -2.7
643,824 + -0.3
643,824 + -2.5
643,824 + +2.2
643,825 - -1.0
643,825 - +1.0
643,828 - +0.6
643,828 - -2.2
643,912 + +0.7
643,919 + +0.1
643,919 + +0.9
643,919 + -2.0
643,976 + +4.6
643,977 - +1.3
643,977 - +1.7
643,977 - +1.1
644,115 - +0.7
644,115 - +0.7
644,130 + -1.0
644,131 - +1.7
644,281 + Pf1N1B4_546 0.22 -0.8
644,281 + Pf1N1B4_546 0.22 -1.6
644,281 + Pf1N1B4_546 0.22 +1.2
644,281 + Pf1N1B4_546 0.22 +1.6
644,282 - Pf1N1B4_546 0.22 +0.2
644,282 - Pf1N1B4_546 0.22 -2.4
644,282 - Pf1N1B4_546 0.22 +0.5
644,282 - Pf1N1B4_546 0.22 -3.4
644,314 + Pf1N1B4_546 0.28 +0.6
644,315 - Pf1N1B4_546 0.28 -1.0
644,315 - Pf1N1B4_546 0.28 -2.3
644,341 + Pf1N1B4_546 0.32 -0.4
644,341 + Pf1N1B4_546 0.32 -2.3
644,342 - Pf1N1B4_546 0.32 +0.8
644,342 - Pf1N1B4_546 0.32 -1.4
644,342 - Pf1N1B4_546 0.32 +0.4
644,386 + Pf1N1B4_546 0.40 +2.1
644,386 + Pf1N1B4_546 0.40 +1.2
644,387 - Pf1N1B4_546 0.40 -1.3
644,387 - Pf1N1B4_546 0.40 -1.1
644,458 + Pf1N1B4_546 0.52 +0.5
644,459 - Pf1N1B4_546 0.52 +0.8
644,459 - Pf1N1B4_546 0.52 -1.0
644,476 - Pf1N1B4_546 0.55 -2.8
644,481 + Pf1N1B4_546 0.56 +0.2
644,481 + Pf1N1B4_546 0.56 -1.7
644,481 + Pf1N1B4_546 0.56 +1.4
644,482 - Pf1N1B4_546 0.56 +1.8
644,615 + Pf1N1B4_546 0.78 +1.9
644,615 + Pf1N1B4_546 0.78 +1.6
644,615 + Pf1N1B4_546 0.78 +1.0
644,615 + Pf1N1B4_546 0.78 -0.3
644,615 + Pf1N1B4_546 0.78 +0.4
644,615 + Pf1N1B4_546 0.78 -1.6
644,615 + Pf1N1B4_546 0.78 -1.6
644,615 + Pf1N1B4_546 0.78 -0.8
644,616 - +1.3
644,616 - Pf1N1B4_546 0.78 -0.7
644,616 - Pf1N1B4_546 0.78 +1.1
644,616 - Pf1N1B4_546 0.78 -1.1
644,616 - Pf1N1B4_546 0.78 +0.7
644,616 - Pf1N1B4_546 0.78 -0.3
644,754 + -1.9
644,754 + -1.3
644,754 + -3.6
644,754 + +2.4
644,754 + +1.5
644,754 + -2.7
644,754 + +0.7
644,754 + -0.6
644,754 + -0.1
644,755 - -0.7
644,755 - -0.4

Or see this region's nucleotide sequence