Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4801

Experiment: carbon source Sucrose 5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4800 and Pf1N1B4_4801 overlap by 4 nucleotidesPf1N1B4_4801 and Pf1N1B4_4802 overlap by 8 nucleotides Pf1N1B4_4800 - Immune-responsive protein 1, at 5,302,728 to 5,304,134 _4800 Pf1N1B4_4801 - Polysaccharide deacetylase, at 5,304,131 to 5,305,018 _4801 Pf1N1B4_4802 - polysaccharide deacetylase, at 5,305,011 to 5,305,859 _4802 Position (kb) 5304 5305 5306Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5304.098 kb on - strandat 5304.141 kb on + strandat 5304.162 kb on + strandat 5304.246 kb on - strand, within Pf1N1B4_4801at 5304.339 kb on + strand, within Pf1N1B4_4801at 5304.339 kb on + strand, within Pf1N1B4_4801at 5304.394 kb on + strand, within Pf1N1B4_4801at 5304.403 kb on - strand, within Pf1N1B4_4801at 5304.715 kb on - strand, within Pf1N1B4_4801at 5304.957 kb on + strandat 5305.229 kb on - strand, within Pf1N1B4_4802at 5305.291 kb on + strand, within Pf1N1B4_4802at 5305.291 kb on + strand, within Pf1N1B4_4802at 5305.361 kb on - strandat 5305.394 kb on - strand, within Pf1N1B4_4802at 5305.735 kb on + strandat 5305.874 kb on - strandat 5305.877 kb on + strandat 5305.877 kb on + strandat 5305.878 kb on - strandat 5305.878 kb on - strandat 5305.879 kb on + strandat 5305.880 kb on - strandat 5305.883 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source Sucrose 5mM
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5,304,098 - +2.6
5,304,141 + +0.0
5,304,162 + -3.7
5,304,246 - Pf1N1B4_4801 0.13 -2.2
5,304,339 + Pf1N1B4_4801 0.23 +0.3
5,304,339 + Pf1N1B4_4801 0.23 -1.7
5,304,394 + Pf1N1B4_4801 0.30 -3.6
5,304,403 - Pf1N1B4_4801 0.31 -1.4
5,304,715 - Pf1N1B4_4801 0.66 -1.1
5,304,957 + -3.0
5,305,229 - Pf1N1B4_4802 0.26 +0.3
5,305,291 + Pf1N1B4_4802 0.33 -3.1
5,305,291 + Pf1N1B4_4802 0.33 +0.9
5,305,361 - +2.3
5,305,394 - Pf1N1B4_4802 0.45 -1.5
5,305,735 + +1.4
5,305,874 - +0.0
5,305,877 + +1.1
5,305,877 + +0.5
5,305,878 - -1.2
5,305,878 - +0.4
5,305,879 + +1.5
5,305,880 - +0.3
5,305,883 + +0.1

Or see this region's nucleotide sequence