Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4519

Experiment: carbon source Sucrose 5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4518 and Pf1N1B4_4519 are separated by 129 nucleotidesPf1N1B4_4519 and Pf1N1B4_4520 are separated by 40 nucleotidesPf1N1B4_4520 and Pf1N1B4_4521 are separated by 2 nucleotides Pf1N1B4_4518 - Possible pyrimidine permease in reductive pathway, at 4,981,697 to 4,983,181 _4518 Pf1N1B4_4519 - Beta-ureidopropionase (EC 3.5.1.6), at 4,983,311 to 4,984,594 _4519 Pf1N1B4_4520 - GENE II AND X PROTEINS, at 4,984,635 to 4,985,048 _4520 Pf1N1B4_4521 - Probable transmembrane protein, at 4,985,051 to 4,985,485 _4521 Position (kb) 4983 4984 4985Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4982.400 kb on - strand, within Pf1N1B4_4518at 4982.748 kb on - strand, within Pf1N1B4_4518at 4982.748 kb on - strandat 4982.847 kb on + strand, within Pf1N1B4_4518at 4982.865 kb on - strand, within Pf1N1B4_4518at 4983.284 kb on - strandat 4983.284 kb on - strandat 4984.146 kb on - strand, within Pf1N1B4_4519at 4985.265 kb on - strand, within Pf1N1B4_4521at 4985.269 kb on - strandat 4985.269 kb on - strand, within Pf1N1B4_4521at 4985.269 kb on - strand, within Pf1N1B4_4521at 4985.269 kb on - strand, within Pf1N1B4_4521at 4985.300 kb on + strand, within Pf1N1B4_4521at 4985.301 kb on - strand, within Pf1N1B4_4521at 4985.518 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source Sucrose 5mM
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4,982,400 - Pf1N1B4_4518 0.47 +0.8
4,982,748 - Pf1N1B4_4518 0.71 +1.2
4,982,748 - +1.9
4,982,847 + Pf1N1B4_4518 0.77 +0.5
4,982,865 - Pf1N1B4_4518 0.79 +0.9
4,983,284 - -2.9
4,983,284 - -1.6
4,984,146 - Pf1N1B4_4519 0.65 -0.9
4,985,265 - Pf1N1B4_4521 0.49 -1.0
4,985,269 - -1.1
4,985,269 - Pf1N1B4_4521 0.50 -0.0
4,985,269 - Pf1N1B4_4521 0.50 -1.5
4,985,269 - Pf1N1B4_4521 0.50 -0.4
4,985,300 + Pf1N1B4_4521 0.57 -1.6
4,985,301 - Pf1N1B4_4521 0.57 -0.1
4,985,518 - +1.1

Or see this region's nucleotide sequence