Experiment: carbon source Sucrose 5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_362 and Pf1N1B4_363 overlap by 8 nucleotides Pf1N1B4_363 and Pf1N1B4_364 are separated by 3 nucleotides Pf1N1B4_364 and Pf1N1B4_365 are separated by 286 nucleotides Pf1N1B4_365 and Pf1N1B4_366 are separated by 12 nucleotides
Pf1N1B4_362 - Lipid A export ATP-binding/permease protein MsbA, at 430,596 to 432,413
_362
Pf1N1B4_363 - Thioredoxin, at 432,406 to 433,044
_363
Pf1N1B4_364 - Rhodanese domain protein UPF0176, at 433,048 to 433,989
_364
Pf1N1B4_365 - Cell division protein BolA, at 434,276 to 434,575
_365
Pf1N1B4_366 - FIG00954136: hypothetical protein, at 434,588 to 435,109
_366
Position (kb) 433
434 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 432.154 kb on + strand at 432.471 kb on - strand, within Pf1N1B4_363 at 432.501 kb on + strand, within Pf1N1B4_363 at 432.502 kb on - strand, within Pf1N1B4_363 at 432.687 kb on - strand, within Pf1N1B4_363 at 432.687 kb on - strand, within Pf1N1B4_363 at 432.782 kb on + strand, within Pf1N1B4_363 at 432.865 kb on - strand, within Pf1N1B4_363 at 432.867 kb on - strand, within Pf1N1B4_363 at 432.867 kb on - strand, within Pf1N1B4_363 at 432.867 kb on - strand, within Pf1N1B4_363 at 432.937 kb on + strand, within Pf1N1B4_363 at 433.022 kb on + strand at 433.022 kb on + strand at 433.022 kb on + strand at 433.023 kb on - strand at 433.023 kb on - strand at 433.023 kb on - strand at 433.023 kb on - strand at 433.023 kb on - strand at 433.023 kb on - strand at 433.073 kb on + strand at 433.074 kb on - strand at 433.074 kb on - strand at 433.074 kb on - strand at 433.074 kb on - strand at 433.074 kb on - strand at 433.079 kb on + strand at 433.079 kb on + strand at 433.080 kb on - strand at 433.205 kb on + strand, within Pf1N1B4_364 at 433.205 kb on + strand, within Pf1N1B4_364 at 433.206 kb on - strand, within Pf1N1B4_364 at 433.206 kb on - strand, within Pf1N1B4_364 at 433.206 kb on - strand, within Pf1N1B4_364 at 433.392 kb on - strand, within Pf1N1B4_364 at 433.421 kb on + strand, within Pf1N1B4_364 at 433.509 kb on - strand, within Pf1N1B4_364 at 433.652 kb on + strand, within Pf1N1B4_364 at 433.653 kb on - strand, within Pf1N1B4_364 at 433.653 kb on - strand, within Pf1N1B4_364 at 433.934 kb on + strand at 433.956 kb on + strand at 433.956 kb on + strand at 433.958 kb on + strand at 433.958 kb on + strand at 433.959 kb on - strand at 433.994 kb on - strand at 433.994 kb on - strand at 434.017 kb on + strand at 434.018 kb on - strand at 434.076 kb on - strand at 434.204 kb on - strand at 434.204 kb on - strand at 434.204 kb on - strand at 434.277 kb on + strand at 434.277 kb on + strand at 434.277 kb on + strand at 434.278 kb on - strand at 434.349 kb on + strand, within Pf1N1B4_365 at 434.349 kb on + strand, within Pf1N1B4_365 at 434.349 kb on + strand, within Pf1N1B4_365 at 434.350 kb on - strand, within Pf1N1B4_365 at 434.350 kb on - strand, within Pf1N1B4_365 at 434.350 kb on - strand, within Pf1N1B4_365 at 434.350 kb on - strand, within Pf1N1B4_365 at 434.350 kb on - strand, within Pf1N1B4_365 at 434.350 kb on - strand, within Pf1N1B4_365 at 434.350 kb on - strand, within Pf1N1B4_365 at 434.350 kb on - strand, within Pf1N1B4_365 at 434.350 kb on - strand, within Pf1N1B4_365 at 434.350 kb on - strand, within Pf1N1B4_365 at 434.350 kb on - strand, within Pf1N1B4_365 at 434.350 kb on - strand, within Pf1N1B4_365 at 434.350 kb on - strand, within Pf1N1B4_365 at 434.403 kb on + strand, within Pf1N1B4_365 at 434.404 kb on - strand, within Pf1N1B4_365 at 434.404 kb on - strand, within Pf1N1B4_365 at 434.590 kb on - strand at 434.620 kb on + strand at 434.761 kb on + strand, within Pf1N1B4_366 at 434.763 kb on + strand, within Pf1N1B4_366 at 434.763 kb on + strand, within Pf1N1B4_366 at 434.763 kb on + strand, within Pf1N1B4_366 at 434.763 kb on + strand, within Pf1N1B4_366 at 434.764 kb on - strand, within Pf1N1B4_366 at 434.764 kb on - strand, within Pf1N1B4_366 at 434.811 kb on + strand, within Pf1N1B4_366 at 434.811 kb on + strand, within Pf1N1B4_366 at 434.811 kb on + strand, within Pf1N1B4_366 at 434.811 kb on + strand, within Pf1N1B4_366 at 434.812 kb on - strand, within Pf1N1B4_366 at 434.812 kb on - strand, within Pf1N1B4_366 at 434.812 kb on - strand, within Pf1N1B4_366 at 434.812 kb on - strand, within Pf1N1B4_366 at 434.812 kb on - strand, within Pf1N1B4_366 at 434.812 kb on - strand, within Pf1N1B4_366 at 434.886 kb on + strand, within Pf1N1B4_366 at 434.886 kb on + strand at 434.886 kb on + strand, within Pf1N1B4_366 at 434.886 kb on + strand, within Pf1N1B4_366 at 434.886 kb on + strand, within Pf1N1B4_366 at 434.886 kb on + strand at 434.887 kb on - strand, within Pf1N1B4_366 at 434.887 kb on - strand, within Pf1N1B4_366 at 434.887 kb on - strand, within Pf1N1B4_366 at 434.887 kb on - strand, within Pf1N1B4_366 at 434.887 kb on - strand, within Pf1N1B4_366 at 434.887 kb on - strand, within Pf1N1B4_366 at 434.887 kb on - strand, within Pf1N1B4_366 at 434.887 kb on - strand, within Pf1N1B4_366 at 434.967 kb on + strand, within Pf1N1B4_366 at 434.967 kb on + strand, within Pf1N1B4_366 at 434.967 kb on + strand, within Pf1N1B4_366 at 434.967 kb on + strand, within Pf1N1B4_366 at 434.967 kb on + strand, within Pf1N1B4_366 at 434.967 kb on + strand, within Pf1N1B4_366 at 434.967 kb on + strand, within Pf1N1B4_366 at 434.967 kb on + strand, within Pf1N1B4_366 at 434.967 kb on + strand, within Pf1N1B4_366 at 434.967 kb on + strand, within Pf1N1B4_366 at 434.967 kb on + strand, within Pf1N1B4_366 at 434.967 kb on + strand, within Pf1N1B4_366 at 434.968 kb on - strand, within Pf1N1B4_366 at 434.968 kb on - strand, within Pf1N1B4_366 at 434.968 kb on - strand, within Pf1N1B4_366 at 434.968 kb on - strand, within Pf1N1B4_366
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source Sucrose 5mM remove 432,154 + +0.8 432,471 - Pf1N1B4_363 0.10 -1.2 432,501 + Pf1N1B4_363 0.15 -0.1 432,502 - Pf1N1B4_363 0.15 -0.0 432,687 - Pf1N1B4_363 0.44 +0.3 432,687 - Pf1N1B4_363 0.44 +0.1 432,782 + Pf1N1B4_363 0.59 -0.1 432,865 - Pf1N1B4_363 0.72 -2.1 432,867 - Pf1N1B4_363 0.72 +0.6 432,867 - Pf1N1B4_363 0.72 -1.7 432,867 - Pf1N1B4_363 0.72 -0.4 432,937 + Pf1N1B4_363 0.83 +2.6 433,022 + +1.0 433,022 + -0.6 433,022 + +1.6 433,023 - -0.3 433,023 - -0.7 433,023 - -0.0 433,023 - +1.3 433,023 - -1.3 433,023 - +0.4 433,073 + +1.6 433,074 - -1.2 433,074 - -0.2 433,074 - -2.0 433,074 - -0.2 433,074 - +1.3 433,079 + +2.8 433,079 + -1.6 433,080 - +0.5 433,205 + Pf1N1B4_364 0.17 -1.1 433,205 + Pf1N1B4_364 0.17 -2.3 433,206 - Pf1N1B4_364 0.17 +0.6 433,206 - Pf1N1B4_364 0.17 -1.6 433,206 - Pf1N1B4_364 0.17 -1.2 433,392 - Pf1N1B4_364 0.37 -3.3 433,421 + Pf1N1B4_364 0.40 -1.5 433,509 - Pf1N1B4_364 0.49 -1.5 433,652 + Pf1N1B4_364 0.64 -0.3 433,653 - Pf1N1B4_364 0.64 -2.4 433,653 - Pf1N1B4_364 0.64 -1.4 433,934 + -0.2 433,956 + -2.3 433,956 + -1.6 433,958 + -1.3 433,958 + -0.5 433,959 - +2.1 433,994 - -1.6 433,994 - -1.6 434,017 + +0.8 434,018 - -1.2 434,076 - -1.3 434,204 - +0.7 434,204 - -0.5 434,204 - -1.9 434,277 + -1.6 434,277 + +0.1 434,277 + +1.1 434,278 - +0.8 434,349 + Pf1N1B4_365 0.24 +2.0 434,349 + Pf1N1B4_365 0.24 +1.0 434,349 + Pf1N1B4_365 0.24 +0.2 434,350 - Pf1N1B4_365 0.25 -2.4 434,350 - Pf1N1B4_365 0.25 -1.0 434,350 - Pf1N1B4_365 0.25 +0.6 434,350 - Pf1N1B4_365 0.25 +1.0 434,350 - Pf1N1B4_365 0.25 +0.8 434,350 - Pf1N1B4_365 0.25 +2.6 434,350 - Pf1N1B4_365 0.25 -2.1 434,350 - Pf1N1B4_365 0.25 +1.1 434,350 - Pf1N1B4_365 0.25 -0.8 434,350 - Pf1N1B4_365 0.25 -2.7 434,350 - Pf1N1B4_365 0.25 -0.8 434,350 - Pf1N1B4_365 0.25 +2.1 434,350 - Pf1N1B4_365 0.25 -2.5 434,403 + Pf1N1B4_365 0.42 +0.7 434,404 - Pf1N1B4_365 0.43 -2.5 434,404 - Pf1N1B4_365 0.43 -1.3 434,590 - +1.8 434,620 + -2.9 434,761 + Pf1N1B4_366 0.33 -1.8 434,763 + Pf1N1B4_366 0.34 -1.1 434,763 + Pf1N1B4_366 0.34 -1.4 434,763 + Pf1N1B4_366 0.34 -2.1 434,763 + Pf1N1B4_366 0.34 -0.0 434,764 - Pf1N1B4_366 0.34 -1.3 434,764 - Pf1N1B4_366 0.34 +0.1 434,811 + Pf1N1B4_366 0.43 +0.4 434,811 + Pf1N1B4_366 0.43 +1.2 434,811 + Pf1N1B4_366 0.43 -0.4 434,811 + Pf1N1B4_366 0.43 -0.3 434,812 - Pf1N1B4_366 0.43 -0.2 434,812 - Pf1N1B4_366 0.43 +0.3 434,812 - Pf1N1B4_366 0.43 +1.2 434,812 - Pf1N1B4_366 0.43 -0.1 434,812 - Pf1N1B4_366 0.43 +2.1 434,812 - Pf1N1B4_366 0.43 +0.6 434,886 + Pf1N1B4_366 0.57 -2.3 434,886 + -1.9 434,886 + Pf1N1B4_366 0.57 +0.1 434,886 + Pf1N1B4_366 0.57 +0.8 434,886 + Pf1N1B4_366 0.57 +0.8 434,886 + -1.5 434,887 - Pf1N1B4_366 0.57 +1.5 434,887 - Pf1N1B4_366 0.57 +0.5 434,887 - Pf1N1B4_366 0.57 -3.1 434,887 - Pf1N1B4_366 0.57 +0.7 434,887 - Pf1N1B4_366 0.57 +1.2 434,887 - Pf1N1B4_366 0.57 -0.7 434,887 - Pf1N1B4_366 0.57 +0.1 434,887 - Pf1N1B4_366 0.57 -1.3 434,967 + Pf1N1B4_366 0.73 +0.1 434,967 + Pf1N1B4_366 0.73 +1.0 434,967 + Pf1N1B4_366 0.73 +1.7 434,967 + Pf1N1B4_366 0.73 -0.8 434,967 + Pf1N1B4_366 0.73 +1.6 434,967 + Pf1N1B4_366 0.73 +0.7 434,967 + Pf1N1B4_366 0.73 -1.5 434,967 + Pf1N1B4_366 0.73 +0.1 434,967 + Pf1N1B4_366 0.73 +0.5 434,967 + Pf1N1B4_366 0.73 -0.3 434,967 + Pf1N1B4_366 0.73 -0.7 434,967 + Pf1N1B4_366 0.73 -0.7 434,968 - Pf1N1B4_366 0.73 -0.3 434,968 - Pf1N1B4_366 0.73 +0.5 434,968 - Pf1N1B4_366 0.73 +0.7 434,968 - Pf1N1B4_366 0.73 -1.1
Or see this region's nucleotide sequence