Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2933

Experiment: carbon source Sucrose 5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2932 and Pf1N1B4_2933 are separated by 86 nucleotidesPf1N1B4_2933 and Pf1N1B4_2934 are separated by 2 nucleotidesPf1N1B4_2934 and Pf1N1B4_2935 are separated by 176 nucleotides Pf1N1B4_2932 - Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1), at 3,288,596 to 3,289,618 _2932 Pf1N1B4_2933 - Uracil permease, at 3,289,705 to 3,290,979 _2933 Pf1N1B4_2934 - Uracil phosphoribosyltransferase (EC 2.4.2.9), at 3,290,982 to 3,291,620 _2934 Pf1N1B4_2935 - Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8), at 3,291,797 to 3,292,354 _2935 Position (kb) 3289 3290 3291Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3289.616 kb on + strandat 3289.706 kb on + strandat 3289.706 kb on + strandat 3289.706 kb on + strandat 3289.706 kb on + strandat 3289.707 kb on - strandat 3289.707 kb on - strandat 3289.707 kb on - strandat 3289.707 kb on - strandat 3289.707 kb on - strandat 3289.906 kb on + strand, within Pf1N1B4_2933at 3289.907 kb on - strand, within Pf1N1B4_2933at 3290.084 kb on + strandat 3290.084 kb on + strand, within Pf1N1B4_2933at 3290.084 kb on + strand, within Pf1N1B4_2933at 3290.084 kb on + strand, within Pf1N1B4_2933at 3290.084 kb on + strand, within Pf1N1B4_2933at 3290.084 kb on + strand, within Pf1N1B4_2933at 3290.084 kb on + strand, within Pf1N1B4_2933at 3290.085 kb on - strand, within Pf1N1B4_2933at 3290.085 kb on - strand, within Pf1N1B4_2933at 3290.085 kb on - strand, within Pf1N1B4_2933at 3290.085 kb on - strand, within Pf1N1B4_2933at 3290.085 kb on - strandat 3290.085 kb on - strand, within Pf1N1B4_2933at 3290.085 kb on - strand, within Pf1N1B4_2933at 3290.085 kb on - strand, within Pf1N1B4_2933at 3290.085 kb on - strand, within Pf1N1B4_2933at 3290.085 kb on - strand, within Pf1N1B4_2933at 3290.085 kb on - strand, within Pf1N1B4_2933at 3290.124 kb on - strand, within Pf1N1B4_2933at 3290.124 kb on - strand, within Pf1N1B4_2933at 3290.124 kb on - strand, within Pf1N1B4_2933at 3290.124 kb on - strand, within Pf1N1B4_2933at 3290.216 kb on + strand, within Pf1N1B4_2933at 3290.217 kb on - strand, within Pf1N1B4_2933at 3290.394 kb on - strand, within Pf1N1B4_2933at 3290.394 kb on - strand, within Pf1N1B4_2933at 3290.419 kb on + strand, within Pf1N1B4_2933at 3290.419 kb on + strand, within Pf1N1B4_2933at 3290.420 kb on - strand, within Pf1N1B4_2933at 3290.420 kb on - strand, within Pf1N1B4_2933at 3290.691 kb on - strand, within Pf1N1B4_2933at 3291.046 kb on + strand, within Pf1N1B4_2934at 3291.046 kb on + strand, within Pf1N1B4_2934at 3291.047 kb on - strand, within Pf1N1B4_2934at 3291.047 kb on - strand, within Pf1N1B4_2934at 3291.047 kb on - strandat 3291.047 kb on - strand, within Pf1N1B4_2934at 3291.047 kb on - strand, within Pf1N1B4_2934at 3291.047 kb on - strand, within Pf1N1B4_2934at 3291.047 kb on - strand, within Pf1N1B4_2934at 3291.085 kb on + strand, within Pf1N1B4_2934at 3291.085 kb on + strand, within Pf1N1B4_2934at 3291.085 kb on + strand, within Pf1N1B4_2934at 3291.085 kb on + strand, within Pf1N1B4_2934at 3291.085 kb on + strand, within Pf1N1B4_2934at 3291.085 kb on + strand, within Pf1N1B4_2934at 3291.085 kb on + strand, within Pf1N1B4_2934at 3291.085 kb on + strand, within Pf1N1B4_2934at 3291.085 kb on + strand, within Pf1N1B4_2934at 3291.085 kb on + strand, within Pf1N1B4_2934at 3291.086 kb on - strand, within Pf1N1B4_2934at 3291.086 kb on - strand, within Pf1N1B4_2934at 3291.086 kb on - strand, within Pf1N1B4_2934at 3291.086 kb on - strand, within Pf1N1B4_2934at 3291.086 kb on - strand, within Pf1N1B4_2934at 3291.086 kb on - strand, within Pf1N1B4_2934at 3291.086 kb on - strand, within Pf1N1B4_2934at 3291.086 kb on - strand, within Pf1N1B4_2934at 3291.283 kb on + strand, within Pf1N1B4_2934at 3291.283 kb on + strand, within Pf1N1B4_2934at 3291.283 kb on + strand, within Pf1N1B4_2934at 3291.283 kb on + strand, within Pf1N1B4_2934at 3291.283 kb on + strand, within Pf1N1B4_2934at 3291.283 kb on + strand, within Pf1N1B4_2934at 3291.283 kb on + strand, within Pf1N1B4_2934at 3291.283 kb on + strand, within Pf1N1B4_2934at 3291.283 kb on + strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.284 kb on - strand, within Pf1N1B4_2934at 3291.466 kb on + strand, within Pf1N1B4_2934at 3291.466 kb on + strand, within Pf1N1B4_2934at 3291.467 kb on - strand, within Pf1N1B4_2934at 3291.499 kb on + strand, within Pf1N1B4_2934at 3291.499 kb on + strand, within Pf1N1B4_2934at 3291.499 kb on + strand, within Pf1N1B4_2934at 3291.499 kb on + strand, within Pf1N1B4_2934at 3291.499 kb on + strand, within Pf1N1B4_2934at 3291.499 kb on + strand, within Pf1N1B4_2934at 3291.499 kb on + strand, within Pf1N1B4_2934at 3291.500 kb on - strand, within Pf1N1B4_2934at 3291.500 kb on - strand, within Pf1N1B4_2934at 3291.500 kb on - strand, within Pf1N1B4_2934at 3291.500 kb on - strand, within Pf1N1B4_2934at 3291.500 kb on - strand, within Pf1N1B4_2934at 3291.500 kb on - strand, within Pf1N1B4_2934at 3291.500 kb on - strand, within Pf1N1B4_2934at 3291.500 kb on - strand, within Pf1N1B4_2934at 3291.500 kb on - strandat 3291.500 kb on - strand, within Pf1N1B4_2934at 3291.551 kb on + strand, within Pf1N1B4_2934at 3291.551 kb on + strand, within Pf1N1B4_2934at 3291.551 kb on + strand, within Pf1N1B4_2934at 3291.552 kb on - strandat 3291.552 kb on - strand, within Pf1N1B4_2934at 3291.552 kb on - strand, within Pf1N1B4_2934at 3291.552 kb on - strand, within Pf1N1B4_2934at 3291.569 kb on + strandat 3291.569 kb on + strandat 3291.569 kb on + strandat 3291.582 kb on - strandat 3291.582 kb on - strandat 3291.582 kb on - strandat 3291.657 kb on + strandat 3291.658 kb on - strandat 3291.663 kb on - strandat 3291.667 kb on + strandat 3291.667 kb on + strandat 3291.668 kb on - strandat 3291.685 kb on + strandat 3291.686 kb on - strandat 3291.686 kb on - strandat 3291.687 kb on + strandat 3291.687 kb on + strandat 3291.687 kb on + strandat 3291.687 kb on + strandat 3291.687 kb on + strandat 3291.687 kb on + strandat 3291.688 kb on - strandat 3291.688 kb on - strandat 3291.693 kb on + strandat 3291.693 kb on + strandat 3291.693 kb on + strandat 3291.693 kb on + strandat 3291.693 kb on + strandat 3291.693 kb on + strandat 3291.693 kb on + strandat 3291.693 kb on + strandat 3291.693 kb on + strandat 3291.694 kb on - strandat 3291.694 kb on - strandat 3291.694 kb on - strandat 3291.694 kb on - strandat 3291.740 kb on + strandat 3291.741 kb on - strandat 3291.741 kb on - strandat 3291.741 kb on - strandat 3291.851 kb on + strandat 3291.852 kb on - strandat 3291.852 kb on - strandat 3291.852 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source Sucrose 5mM
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3,289,616 + +2.0
3,289,706 + +1.8
3,289,706 + +0.3
3,289,706 + -1.0
3,289,706 + +1.0
3,289,707 - +0.8
3,289,707 - -1.9
3,289,707 - -0.4
3,289,707 - -0.4
3,289,707 - -1.9
3,289,906 + Pf1N1B4_2933 0.16 -0.1
3,289,907 - Pf1N1B4_2933 0.16 +0.8
3,290,084 + +2.6
3,290,084 + Pf1N1B4_2933 0.30 -2.4
3,290,084 + Pf1N1B4_2933 0.30 -1.3
3,290,084 + Pf1N1B4_2933 0.30 -1.9
3,290,084 + Pf1N1B4_2933 0.30 -1.0
3,290,084 + Pf1N1B4_2933 0.30 -1.7
3,290,084 + Pf1N1B4_2933 0.30 -0.4
3,290,085 - Pf1N1B4_2933 0.30 -1.9
3,290,085 - Pf1N1B4_2933 0.30 +0.5
3,290,085 - Pf1N1B4_2933 0.30 -2.1
3,290,085 - Pf1N1B4_2933 0.30 +1.4
3,290,085 - -0.0
3,290,085 - Pf1N1B4_2933 0.30 -0.9
3,290,085 - Pf1N1B4_2933 0.30 -2.5
3,290,085 - Pf1N1B4_2933 0.30 +2.0
3,290,085 - Pf1N1B4_2933 0.30 +1.4
3,290,085 - Pf1N1B4_2933 0.30 +1.4
3,290,085 - Pf1N1B4_2933 0.30 +1.4
3,290,124 - Pf1N1B4_2933 0.33 -2.3
3,290,124 - Pf1N1B4_2933 0.33 -2.0
3,290,124 - Pf1N1B4_2933 0.33 +0.5
3,290,124 - Pf1N1B4_2933 0.33 +1.9
3,290,216 + Pf1N1B4_2933 0.40 +4.1
3,290,217 - Pf1N1B4_2933 0.40 -2.3
3,290,394 - Pf1N1B4_2933 0.54 +1.0
3,290,394 - Pf1N1B4_2933 0.54 -2.9
3,290,419 + Pf1N1B4_2933 0.56 +2.4
3,290,419 + Pf1N1B4_2933 0.56 -0.0
3,290,420 - Pf1N1B4_2933 0.56 +0.8
3,290,420 - Pf1N1B4_2933 0.56 -2.0
3,290,691 - Pf1N1B4_2933 0.77 -0.9
3,291,046 + Pf1N1B4_2934 0.10 -1.9
3,291,046 + Pf1N1B4_2934 0.10 -1.6
3,291,047 - Pf1N1B4_2934 0.10 -3.3
3,291,047 - Pf1N1B4_2934 0.10 +0.2
3,291,047 - +3.1
3,291,047 - Pf1N1B4_2934 0.10 -2.3
3,291,047 - Pf1N1B4_2934 0.10 -2.2
3,291,047 - Pf1N1B4_2934 0.10 -1.8
3,291,047 - Pf1N1B4_2934 0.10 -0.0
3,291,085 + Pf1N1B4_2934 0.16 +1.8
3,291,085 + Pf1N1B4_2934 0.16 +1.5
3,291,085 + Pf1N1B4_2934 0.16 -2.8
3,291,085 + Pf1N1B4_2934 0.16 -0.2
3,291,085 + Pf1N1B4_2934 0.16 -2.3
3,291,085 + Pf1N1B4_2934 0.16 -1.3
3,291,085 + Pf1N1B4_2934 0.16 +1.6
3,291,085 + Pf1N1B4_2934 0.16 +1.0
3,291,085 + Pf1N1B4_2934 0.16 -2.3
3,291,085 + Pf1N1B4_2934 0.16 -0.7
3,291,086 - Pf1N1B4_2934 0.16 +1.5
3,291,086 - Pf1N1B4_2934 0.16 +0.0
3,291,086 - Pf1N1B4_2934 0.16 +1.3
3,291,086 - Pf1N1B4_2934 0.16 -0.3
3,291,086 - Pf1N1B4_2934 0.16 -0.3
3,291,086 - Pf1N1B4_2934 0.16 -1.4
3,291,086 - Pf1N1B4_2934 0.16 +0.1
3,291,086 - Pf1N1B4_2934 0.16 -0.7
3,291,283 + Pf1N1B4_2934 0.47 -1.1
3,291,283 + Pf1N1B4_2934 0.47 -1.2
3,291,283 + Pf1N1B4_2934 0.47 +1.3
3,291,283 + Pf1N1B4_2934 0.47 +1.8
3,291,283 + Pf1N1B4_2934 0.47 -0.6
3,291,283 + Pf1N1B4_2934 0.47 +2.2
3,291,283 + Pf1N1B4_2934 0.47 -1.7
3,291,283 + Pf1N1B4_2934 0.47 -2.0
3,291,283 + Pf1N1B4_2934 0.47 +0.0
3,291,284 - Pf1N1B4_2934 0.47 -1.8
3,291,284 - Pf1N1B4_2934 0.47 -0.1
3,291,284 - Pf1N1B4_2934 0.47 -0.9
3,291,284 - Pf1N1B4_2934 0.47 -1.8
3,291,284 - Pf1N1B4_2934 0.47 +0.8
3,291,284 - Pf1N1B4_2934 0.47 +1.3
3,291,284 - Pf1N1B4_2934 0.47 +0.3
3,291,284 - Pf1N1B4_2934 0.47 -1.0
3,291,284 - Pf1N1B4_2934 0.47 +0.1
3,291,284 - Pf1N1B4_2934 0.47 -1.5
3,291,284 - Pf1N1B4_2934 0.47 +0.2
3,291,284 - Pf1N1B4_2934 0.47 +0.3
3,291,284 - Pf1N1B4_2934 0.47 +1.1
3,291,284 - Pf1N1B4_2934 0.47 +1.9
3,291,284 - Pf1N1B4_2934 0.47 -0.0
3,291,284 - Pf1N1B4_2934 0.47 -0.2
3,291,284 - Pf1N1B4_2934 0.47 -1.6
3,291,466 + Pf1N1B4_2934 0.76 -0.5
3,291,466 + Pf1N1B4_2934 0.76 -0.2
3,291,467 - Pf1N1B4_2934 0.76 -1.0
3,291,499 + Pf1N1B4_2934 0.81 -2.1
3,291,499 + Pf1N1B4_2934 0.81 +0.6
3,291,499 + Pf1N1B4_2934 0.81 -1.6
3,291,499 + Pf1N1B4_2934 0.81 -1.9
3,291,499 + Pf1N1B4_2934 0.81 -2.0
3,291,499 + Pf1N1B4_2934 0.81 +0.7
3,291,499 + Pf1N1B4_2934 0.81 +1.4
3,291,500 - Pf1N1B4_2934 0.81 -0.2
3,291,500 - Pf1N1B4_2934 0.81 -1.9
3,291,500 - Pf1N1B4_2934 0.81 -2.1
3,291,500 - Pf1N1B4_2934 0.81 -1.4
3,291,500 - Pf1N1B4_2934 0.81 -0.9
3,291,500 - Pf1N1B4_2934 0.81 +0.9
3,291,500 - Pf1N1B4_2934 0.81 -1.3
3,291,500 - Pf1N1B4_2934 0.81 -2.0
3,291,500 - +2.0
3,291,500 - Pf1N1B4_2934 0.81 -0.9
3,291,551 + Pf1N1B4_2934 0.89 -1.7
3,291,551 + Pf1N1B4_2934 0.89 -2.6
3,291,551 + Pf1N1B4_2934 0.89 +1.7
3,291,552 - +0.6
3,291,552 - Pf1N1B4_2934 0.89 +1.3
3,291,552 - Pf1N1B4_2934 0.89 -1.6
3,291,552 - Pf1N1B4_2934 0.89 +0.5
3,291,569 + -0.2
3,291,569 + +1.0
3,291,569 + -1.2
3,291,582 - +0.5
3,291,582 - -1.8
3,291,582 - +1.6
3,291,657 + +1.4
3,291,658 - -0.3
3,291,663 - -1.3
3,291,667 + -1.7
3,291,667 + +1.6
3,291,668 - -0.5
3,291,685 + +1.0
3,291,686 - -2.0
3,291,686 - +1.3
3,291,687 + +2.6
3,291,687 + -0.6
3,291,687 + +2.6
3,291,687 + -0.4
3,291,687 + +1.3
3,291,687 + +2.2
3,291,688 - +0.5
3,291,688 - -0.1
3,291,693 + +0.3
3,291,693 + +1.2
3,291,693 + -0.9
3,291,693 + +0.4
3,291,693 + -1.1
3,291,693 + +0.3
3,291,693 + +1.6
3,291,693 + +2.2
3,291,693 + -0.2
3,291,694 - +1.3
3,291,694 - -0.7
3,291,694 - -2.0
3,291,694 - -0.6
3,291,740 + -0.4
3,291,741 - -1.7
3,291,741 - -0.3
3,291,741 - -0.7
3,291,851 + -2.8
3,291,852 - -1.0
3,291,852 - -2.7
3,291,852 - +1.1

Or see this region's nucleotide sequence