Experiment: carbon source Sucrose 5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2932 and Pf1N1B4_2933 are separated by 86 nucleotides Pf1N1B4_2933 and Pf1N1B4_2934 are separated by 2 nucleotides Pf1N1B4_2934 and Pf1N1B4_2935 are separated by 176 nucleotides
Pf1N1B4_2932 - Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1), at 3,288,596 to 3,289,618
_2932
Pf1N1B4_2933 - Uracil permease, at 3,289,705 to 3,290,979
_2933
Pf1N1B4_2934 - Uracil phosphoribosyltransferase (EC 2.4.2.9), at 3,290,982 to 3,291,620
_2934
Pf1N1B4_2935 - Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8), at 3,291,797 to 3,292,354
_2935
Position (kb)
3289
3290
3291 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3289.616 kb on + strand at 3289.706 kb on + strand at 3289.706 kb on + strand at 3289.706 kb on + strand at 3289.706 kb on + strand at 3289.707 kb on - strand at 3289.707 kb on - strand at 3289.707 kb on - strand at 3289.707 kb on - strand at 3289.707 kb on - strand at 3289.906 kb on + strand, within Pf1N1B4_2933 at 3289.907 kb on - strand, within Pf1N1B4_2933 at 3290.084 kb on + strand at 3290.084 kb on + strand, within Pf1N1B4_2933 at 3290.084 kb on + strand, within Pf1N1B4_2933 at 3290.084 kb on + strand, within Pf1N1B4_2933 at 3290.084 kb on + strand, within Pf1N1B4_2933 at 3290.084 kb on + strand, within Pf1N1B4_2933 at 3290.084 kb on + strand, within Pf1N1B4_2933 at 3290.085 kb on - strand, within Pf1N1B4_2933 at 3290.085 kb on - strand, within Pf1N1B4_2933 at 3290.085 kb on - strand, within Pf1N1B4_2933 at 3290.085 kb on - strand, within Pf1N1B4_2933 at 3290.085 kb on - strand at 3290.085 kb on - strand, within Pf1N1B4_2933 at 3290.085 kb on - strand, within Pf1N1B4_2933 at 3290.085 kb on - strand, within Pf1N1B4_2933 at 3290.085 kb on - strand, within Pf1N1B4_2933 at 3290.085 kb on - strand, within Pf1N1B4_2933 at 3290.085 kb on - strand, within Pf1N1B4_2933 at 3290.124 kb on - strand, within Pf1N1B4_2933 at 3290.124 kb on - strand, within Pf1N1B4_2933 at 3290.124 kb on - strand, within Pf1N1B4_2933 at 3290.124 kb on - strand, within Pf1N1B4_2933 at 3290.216 kb on + strand, within Pf1N1B4_2933 at 3290.217 kb on - strand, within Pf1N1B4_2933 at 3290.394 kb on - strand, within Pf1N1B4_2933 at 3290.394 kb on - strand, within Pf1N1B4_2933 at 3290.419 kb on + strand, within Pf1N1B4_2933 at 3290.419 kb on + strand, within Pf1N1B4_2933 at 3290.420 kb on - strand, within Pf1N1B4_2933 at 3290.420 kb on - strand, within Pf1N1B4_2933 at 3290.691 kb on - strand, within Pf1N1B4_2933 at 3291.046 kb on + strand, within Pf1N1B4_2934 at 3291.046 kb on + strand, within Pf1N1B4_2934 at 3291.047 kb on - strand, within Pf1N1B4_2934 at 3291.047 kb on - strand, within Pf1N1B4_2934 at 3291.047 kb on - strand at 3291.047 kb on - strand, within Pf1N1B4_2934 at 3291.047 kb on - strand, within Pf1N1B4_2934 at 3291.047 kb on - strand, within Pf1N1B4_2934 at 3291.047 kb on - strand, within Pf1N1B4_2934 at 3291.085 kb on + strand, within Pf1N1B4_2934 at 3291.085 kb on + strand, within Pf1N1B4_2934 at 3291.085 kb on + strand, within Pf1N1B4_2934 at 3291.085 kb on + strand, within Pf1N1B4_2934 at 3291.085 kb on + strand, within Pf1N1B4_2934 at 3291.085 kb on + strand, within Pf1N1B4_2934 at 3291.085 kb on + strand, within Pf1N1B4_2934 at 3291.085 kb on + strand, within Pf1N1B4_2934 at 3291.085 kb on + strand, within Pf1N1B4_2934 at 3291.085 kb on + strand, within Pf1N1B4_2934 at 3291.086 kb on - strand, within Pf1N1B4_2934 at 3291.086 kb on - strand, within Pf1N1B4_2934 at 3291.086 kb on - strand, within Pf1N1B4_2934 at 3291.086 kb on - strand, within Pf1N1B4_2934 at 3291.086 kb on - strand, within Pf1N1B4_2934 at 3291.086 kb on - strand, within Pf1N1B4_2934 at 3291.086 kb on - strand, within Pf1N1B4_2934 at 3291.086 kb on - strand, within Pf1N1B4_2934 at 3291.283 kb on + strand, within Pf1N1B4_2934 at 3291.283 kb on + strand, within Pf1N1B4_2934 at 3291.283 kb on + strand, within Pf1N1B4_2934 at 3291.283 kb on + strand, within Pf1N1B4_2934 at 3291.283 kb on + strand, within Pf1N1B4_2934 at 3291.283 kb on + strand, within Pf1N1B4_2934 at 3291.283 kb on + strand, within Pf1N1B4_2934 at 3291.283 kb on + strand, within Pf1N1B4_2934 at 3291.283 kb on + strand, within Pf1N1B4_2934 at 3291.284 kb on - strand, within Pf1N1B4_2934 at 3291.284 kb on - strand, within Pf1N1B4_2934 at 3291.284 kb on - strand, within Pf1N1B4_2934 at 3291.284 kb on - strand, within Pf1N1B4_2934 at 3291.284 kb on - strand, within Pf1N1B4_2934 at 3291.284 kb on - strand, within Pf1N1B4_2934 at 3291.284 kb on - strand, within Pf1N1B4_2934 at 3291.284 kb on - strand, within Pf1N1B4_2934 at 3291.284 kb on - strand, within Pf1N1B4_2934 at 3291.284 kb on - strand, within Pf1N1B4_2934 at 3291.284 kb on - strand, within Pf1N1B4_2934 at 3291.284 kb on - strand, within Pf1N1B4_2934 at 3291.284 kb on - strand, within Pf1N1B4_2934 at 3291.284 kb on - strand, within Pf1N1B4_2934 at 3291.284 kb on - strand, within Pf1N1B4_2934 at 3291.284 kb on - strand, within Pf1N1B4_2934 at 3291.284 kb on - strand, within Pf1N1B4_2934 at 3291.466 kb on + strand, within Pf1N1B4_2934 at 3291.466 kb on + strand, within Pf1N1B4_2934 at 3291.467 kb on - strand, within Pf1N1B4_2934 at 3291.499 kb on + strand, within Pf1N1B4_2934 at 3291.499 kb on + strand, within Pf1N1B4_2934 at 3291.499 kb on + strand, within Pf1N1B4_2934 at 3291.499 kb on + strand, within Pf1N1B4_2934 at 3291.499 kb on + strand, within Pf1N1B4_2934 at 3291.499 kb on + strand, within Pf1N1B4_2934 at 3291.499 kb on + strand, within Pf1N1B4_2934 at 3291.500 kb on - strand, within Pf1N1B4_2934 at 3291.500 kb on - strand, within Pf1N1B4_2934 at 3291.500 kb on - strand, within Pf1N1B4_2934 at 3291.500 kb on - strand, within Pf1N1B4_2934 at 3291.500 kb on - strand, within Pf1N1B4_2934 at 3291.500 kb on - strand, within Pf1N1B4_2934 at 3291.500 kb on - strand, within Pf1N1B4_2934 at 3291.500 kb on - strand, within Pf1N1B4_2934 at 3291.500 kb on - strand at 3291.500 kb on - strand, within Pf1N1B4_2934 at 3291.551 kb on + strand, within Pf1N1B4_2934 at 3291.551 kb on + strand, within Pf1N1B4_2934 at 3291.551 kb on + strand, within Pf1N1B4_2934 at 3291.552 kb on - strand at 3291.552 kb on - strand, within Pf1N1B4_2934 at 3291.552 kb on - strand, within Pf1N1B4_2934 at 3291.552 kb on - strand, within Pf1N1B4_2934 at 3291.569 kb on + strand at 3291.569 kb on + strand at 3291.569 kb on + strand at 3291.582 kb on - strand at 3291.582 kb on - strand at 3291.582 kb on - strand at 3291.657 kb on + strand at 3291.658 kb on - strand at 3291.663 kb on - strand at 3291.667 kb on + strand at 3291.667 kb on + strand at 3291.668 kb on - strand at 3291.685 kb on + strand at 3291.686 kb on - strand at 3291.686 kb on - strand at 3291.687 kb on + strand at 3291.687 kb on + strand at 3291.687 kb on + strand at 3291.687 kb on + strand at 3291.687 kb on + strand at 3291.687 kb on + strand at 3291.688 kb on - strand at 3291.688 kb on - strand at 3291.693 kb on + strand at 3291.693 kb on + strand at 3291.693 kb on + strand at 3291.693 kb on + strand at 3291.693 kb on + strand at 3291.693 kb on + strand at 3291.693 kb on + strand at 3291.693 kb on + strand at 3291.693 kb on + strand at 3291.694 kb on - strand at 3291.694 kb on - strand at 3291.694 kb on - strand at 3291.694 kb on - strand at 3291.740 kb on + strand at 3291.741 kb on - strand at 3291.741 kb on - strand at 3291.741 kb on - strand at 3291.851 kb on + strand at 3291.852 kb on - strand at 3291.852 kb on - strand at 3291.852 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source Sucrose 5mM remove 3,289,616 + +2.0 3,289,706 + +1.8 3,289,706 + +0.3 3,289,706 + -1.0 3,289,706 + +1.0 3,289,707 - +0.8 3,289,707 - -1.9 3,289,707 - -0.4 3,289,707 - -0.4 3,289,707 - -1.9 3,289,906 + Pf1N1B4_2933 0.16 -0.1 3,289,907 - Pf1N1B4_2933 0.16 +0.8 3,290,084 + +2.6 3,290,084 + Pf1N1B4_2933 0.30 -2.4 3,290,084 + Pf1N1B4_2933 0.30 -1.3 3,290,084 + Pf1N1B4_2933 0.30 -1.9 3,290,084 + Pf1N1B4_2933 0.30 -1.0 3,290,084 + Pf1N1B4_2933 0.30 -1.7 3,290,084 + Pf1N1B4_2933 0.30 -0.4 3,290,085 - Pf1N1B4_2933 0.30 -1.9 3,290,085 - Pf1N1B4_2933 0.30 +0.5 3,290,085 - Pf1N1B4_2933 0.30 -2.1 3,290,085 - Pf1N1B4_2933 0.30 +1.4 3,290,085 - -0.0 3,290,085 - Pf1N1B4_2933 0.30 -0.9 3,290,085 - Pf1N1B4_2933 0.30 -2.5 3,290,085 - Pf1N1B4_2933 0.30 +2.0 3,290,085 - Pf1N1B4_2933 0.30 +1.4 3,290,085 - Pf1N1B4_2933 0.30 +1.4 3,290,085 - Pf1N1B4_2933 0.30 +1.4 3,290,124 - Pf1N1B4_2933 0.33 -2.3 3,290,124 - Pf1N1B4_2933 0.33 -2.0 3,290,124 - Pf1N1B4_2933 0.33 +0.5 3,290,124 - Pf1N1B4_2933 0.33 +1.9 3,290,216 + Pf1N1B4_2933 0.40 +4.1 3,290,217 - Pf1N1B4_2933 0.40 -2.3 3,290,394 - Pf1N1B4_2933 0.54 +1.0 3,290,394 - Pf1N1B4_2933 0.54 -2.9 3,290,419 + Pf1N1B4_2933 0.56 +2.4 3,290,419 + Pf1N1B4_2933 0.56 -0.0 3,290,420 - Pf1N1B4_2933 0.56 +0.8 3,290,420 - Pf1N1B4_2933 0.56 -2.0 3,290,691 - Pf1N1B4_2933 0.77 -0.9 3,291,046 + Pf1N1B4_2934 0.10 -1.9 3,291,046 + Pf1N1B4_2934 0.10 -1.6 3,291,047 - Pf1N1B4_2934 0.10 -3.3 3,291,047 - Pf1N1B4_2934 0.10 +0.2 3,291,047 - +3.1 3,291,047 - Pf1N1B4_2934 0.10 -2.3 3,291,047 - Pf1N1B4_2934 0.10 -2.2 3,291,047 - Pf1N1B4_2934 0.10 -1.8 3,291,047 - Pf1N1B4_2934 0.10 -0.0 3,291,085 + Pf1N1B4_2934 0.16 +1.8 3,291,085 + Pf1N1B4_2934 0.16 +1.5 3,291,085 + Pf1N1B4_2934 0.16 -2.8 3,291,085 + Pf1N1B4_2934 0.16 -0.2 3,291,085 + Pf1N1B4_2934 0.16 -2.3 3,291,085 + Pf1N1B4_2934 0.16 -1.3 3,291,085 + Pf1N1B4_2934 0.16 +1.6 3,291,085 + Pf1N1B4_2934 0.16 +1.0 3,291,085 + Pf1N1B4_2934 0.16 -2.3 3,291,085 + Pf1N1B4_2934 0.16 -0.7 3,291,086 - Pf1N1B4_2934 0.16 +1.5 3,291,086 - Pf1N1B4_2934 0.16 +0.0 3,291,086 - Pf1N1B4_2934 0.16 +1.3 3,291,086 - Pf1N1B4_2934 0.16 -0.3 3,291,086 - Pf1N1B4_2934 0.16 -0.3 3,291,086 - Pf1N1B4_2934 0.16 -1.4 3,291,086 - Pf1N1B4_2934 0.16 +0.1 3,291,086 - Pf1N1B4_2934 0.16 -0.7 3,291,283 + Pf1N1B4_2934 0.47 -1.1 3,291,283 + Pf1N1B4_2934 0.47 -1.2 3,291,283 + Pf1N1B4_2934 0.47 +1.3 3,291,283 + Pf1N1B4_2934 0.47 +1.8 3,291,283 + Pf1N1B4_2934 0.47 -0.6 3,291,283 + Pf1N1B4_2934 0.47 +2.2 3,291,283 + Pf1N1B4_2934 0.47 -1.7 3,291,283 + Pf1N1B4_2934 0.47 -2.0 3,291,283 + Pf1N1B4_2934 0.47 +0.0 3,291,284 - Pf1N1B4_2934 0.47 -1.8 3,291,284 - Pf1N1B4_2934 0.47 -0.1 3,291,284 - Pf1N1B4_2934 0.47 -0.9 3,291,284 - Pf1N1B4_2934 0.47 -1.8 3,291,284 - Pf1N1B4_2934 0.47 +0.8 3,291,284 - Pf1N1B4_2934 0.47 +1.3 3,291,284 - Pf1N1B4_2934 0.47 +0.3 3,291,284 - Pf1N1B4_2934 0.47 -1.0 3,291,284 - Pf1N1B4_2934 0.47 +0.1 3,291,284 - Pf1N1B4_2934 0.47 -1.5 3,291,284 - Pf1N1B4_2934 0.47 +0.2 3,291,284 - Pf1N1B4_2934 0.47 +0.3 3,291,284 - Pf1N1B4_2934 0.47 +1.1 3,291,284 - Pf1N1B4_2934 0.47 +1.9 3,291,284 - Pf1N1B4_2934 0.47 -0.0 3,291,284 - Pf1N1B4_2934 0.47 -0.2 3,291,284 - Pf1N1B4_2934 0.47 -1.6 3,291,466 + Pf1N1B4_2934 0.76 -0.5 3,291,466 + Pf1N1B4_2934 0.76 -0.2 3,291,467 - Pf1N1B4_2934 0.76 -1.0 3,291,499 + Pf1N1B4_2934 0.81 -2.1 3,291,499 + Pf1N1B4_2934 0.81 +0.6 3,291,499 + Pf1N1B4_2934 0.81 -1.6 3,291,499 + Pf1N1B4_2934 0.81 -1.9 3,291,499 + Pf1N1B4_2934 0.81 -2.0 3,291,499 + Pf1N1B4_2934 0.81 +0.7 3,291,499 + Pf1N1B4_2934 0.81 +1.4 3,291,500 - Pf1N1B4_2934 0.81 -0.2 3,291,500 - Pf1N1B4_2934 0.81 -1.9 3,291,500 - Pf1N1B4_2934 0.81 -2.1 3,291,500 - Pf1N1B4_2934 0.81 -1.4 3,291,500 - Pf1N1B4_2934 0.81 -0.9 3,291,500 - Pf1N1B4_2934 0.81 +0.9 3,291,500 - Pf1N1B4_2934 0.81 -1.3 3,291,500 - Pf1N1B4_2934 0.81 -2.0 3,291,500 - +2.0 3,291,500 - Pf1N1B4_2934 0.81 -0.9 3,291,551 + Pf1N1B4_2934 0.89 -1.7 3,291,551 + Pf1N1B4_2934 0.89 -2.6 3,291,551 + Pf1N1B4_2934 0.89 +1.7 3,291,552 - +0.6 3,291,552 - Pf1N1B4_2934 0.89 +1.3 3,291,552 - Pf1N1B4_2934 0.89 -1.6 3,291,552 - Pf1N1B4_2934 0.89 +0.5 3,291,569 + -0.2 3,291,569 + +1.0 3,291,569 + -1.2 3,291,582 - +0.5 3,291,582 - -1.8 3,291,582 - +1.6 3,291,657 + +1.4 3,291,658 - -0.3 3,291,663 - -1.3 3,291,667 + -1.7 3,291,667 + +1.6 3,291,668 - -0.5 3,291,685 + +1.0 3,291,686 - -2.0 3,291,686 - +1.3 3,291,687 + +2.6 3,291,687 + -0.6 3,291,687 + +2.6 3,291,687 + -0.4 3,291,687 + +1.3 3,291,687 + +2.2 3,291,688 - +0.5 3,291,688 - -0.1 3,291,693 + +0.3 3,291,693 + +1.2 3,291,693 + -0.9 3,291,693 + +0.4 3,291,693 + -1.1 3,291,693 + +0.3 3,291,693 + +1.6 3,291,693 + +2.2 3,291,693 + -0.2 3,291,694 - +1.3 3,291,694 - -0.7 3,291,694 - -2.0 3,291,694 - -0.6 3,291,740 + -0.4 3,291,741 - -1.7 3,291,741 - -0.3 3,291,741 - -0.7 3,291,851 + -2.8 3,291,852 - -1.0 3,291,852 - -2.7 3,291,852 - +1.1
Or see this region's nucleotide sequence