Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004840

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
1,055,998	+				+0.1
1,055,998	+				+1.1
1,055,999	-				-1.1
1,055,999	-				-1.4
1,056,046	-				+2.1
1,056,046	-				-0.5
1,056,046	-				-1.5
1,056,144	+		ABIE53_004839	0.16	+0.3
1,056,145	-		ABIE53_004839	0.16	-1.7
1,056,145	-		ABIE53_004839	0.16	-2.4
1,056,145	-		ABIE53_004839	0.16	-1.3
1,056,145	-		ABIE53_004839	0.16	-1.3
1,056,148	+		ABIE53_004839	0.16	-1.2
1,056,148	+		ABIE53_004839	0.16	-1.7
1,056,148	+		ABIE53_004839	0.16	-0.6
1,056,148	+		ABIE53_004839	0.16	+2.3
1,056,148	+		ABIE53_004839	0.16	+1.1
1,056,148	+		ABIE53_004839	0.16	-3.5
1,056,149	-		ABIE53_004839	0.16	-1.0
1,056,149	-		ABIE53_004839	0.16	+2.1
1,056,149	-		ABIE53_004839	0.16	+1.1
1,056,149	-		ABIE53_004839	0.16	-0.1
1,056,149	-		ABIE53_004839	0.16	+0.9
1,056,149	-		ABIE53_004839	0.16	+1.0
1,056,149	-		ABIE53_004839	0.16	+2.1
1,056,149	-		ABIE53_004839	0.16	+0.9
1,056,149	-		ABIE53_004839	0.16	+0.7
1,056,149	-		ABIE53_004839	0.16	-1.5
1,056,185	+		ABIE53_004839	0.21	-1.9
1,056,185	+		ABIE53_004839	0.21	-0.9
1,056,186	-		ABIE53_004839	0.21	-0.6
1,056,186	-		ABIE53_004839	0.21	+1.1
1,056,255	+		ABIE53_004839	0.30	-1.9
1,056,255	+		ABIE53_004839	0.30	-1.2
1,056,255	+		ABIE53_004839	0.30	-1.8
1,056,255	+		ABIE53_004839	0.30	-0.3
1,056,255	+		ABIE53_004839	0.30	-0.7
1,056,255	+		ABIE53_004839	0.30	-0.4
1,056,255	+		ABIE53_004839	0.30	-1.8
1,056,255	+		ABIE53_004839	0.30	+0.6
1,056,255	+		ABIE53_004839	0.30	-0.4
1,056,255	+		ABIE53_004839	0.30	-0.4
1,056,256	-		ABIE53_004839	0.30	+0.0
1,056,256	-		ABIE53_004839	0.30	+0.7
1,056,256	-		ABIE53_004839	0.30	+2.0
1,056,256	-		ABIE53_004839	0.30	-0.0
1,056,345	+		ABIE53_004839	0.42	-1.0
1,056,345	+		ABIE53_004839	0.42	+1.0
1,056,346	-		ABIE53_004839	0.42	-0.7
1,056,378	+		ABIE53_004839	0.46	-1.5
1,056,378	+		ABIE53_004839	0.46	+1.1
1,056,802	+				-1.2
1,056,802	+				+2.1
1,056,802	+				+1.7
1,056,802	+				+1.1
1,056,802	+				-1.9
1,056,802	+				+1.8
1,056,802	+				+1.3
1,056,803	-				-0.4
1,056,803	-				+1.6
1,056,803	-				+1.0
1,056,803	-				+0.6
1,056,803	-				-0.3
1,056,803	-				-0.9
1,056,803	-				-0.2
1,056,803	-				-2.5
1,056,803	-				-0.2
1,056,803	-				-0.3
1,056,803	-				-0.3
1,056,803	-				+0.1
1,056,818	-				+0.4
1,056,818	-				+0.3
1,056,834	+				-1.2
1,056,849	-				+3.0
1,056,851	+				+0.1
1,056,853	+				-1.2
1,056,854	-				-0.7
1,056,865	+				-2.7
1,056,865	+				+0.1
1,056,865	+				+0.6
1,056,899	+				+0.6
1,056,899	+				-0.4
1,056,899	+				-0.7
1,056,899	+				-1.3
1,056,899	+				-0.8
1,056,900	-				+3.7
1,056,900	-				-1.4
1,056,900	-				+0.4
1,056,900	-				+2.0
1,056,900	-				+0.1
1,056,900	-				+1.5
1,056,900	-				+0.4
1,056,900	-				-1.8
1,056,900	-				-0.0
1,056,929	+				-0.7
1,056,930	-				+0.8
1,056,930	-				-1.6
1,057,367	+		ABIE53_004840	0.63	-1.4
1,057,367	+		ABIE53_004840	0.63	-1.0
1,057,367	+		ABIE53_004840	0.63	+0.1
1,057,368	-		ABIE53_004840	0.63	-0.2
1,057,521	+		ABIE53_004840	0.84	-1.9
1,057,521	+		ABIE53_004840	0.84	+1.4
1,057,521	+		ABIE53_004840	0.84	+2.6
1,057,521	+		ABIE53_004840	0.84	-1.6
1,057,521	+		ABIE53_004840	0.84	-0.3
1,057,521	+		ABIE53_004840	0.84	+0.3
1,057,521	+		ABIE53_004840	0.84	+2.1
1,057,521	+		ABIE53_004840	0.84	+2.1
1,057,521	+		ABIE53_004840	0.84	-0.9
1,057,521	+		ABIE53_004840	0.84	+0.4
1,057,521	+		ABIE53_004840	0.84	+0.1
1,057,521	+		ABIE53_004840	0.84	-0.3
1,057,521	+		ABIE53_004840	0.84	-1.0
1,057,521	+		ABIE53_004840	0.84	-0.9
1,057,521	+		ABIE53_004840	0.84	-0.8
1,057,522	-		ABIE53_004840	0.85	-2.5
1,057,522	-		ABIE53_004840	0.85	-0.9
1,057,522	-		ABIE53_004840	0.85	+0.6
1,057,522	-		ABIE53_004840	0.85	-0.5
1,057,522	-		ABIE53_004840	0.85	-0.4
1,057,522	-		ABIE53_004840	0.85	+4.4
1,057,522	-		ABIE53_004840	0.85	-0.7
1,057,522	-		ABIE53_004840	0.85	+0.8
1,057,522	-		ABIE53_004840	0.85	+0.1
1,057,522	-		ABIE53_004840	0.85	-0.8
1,057,522	-		ABIE53_004840	0.85	+0.8
1,057,522	-		ABIE53_004840	0.85	+0.1
1,057,522	-		ABIE53_004840	0.85	-0.2
1,057,522	-		ABIE53_004840	0.85	+0.6
1,057,523	+		ABIE53_004840	0.85	+0.9
1,057,601	+				+2.8
1,057,601	+				-0.4
1,057,601	+				-1.0
1,057,610	+				+0.1
1,057,610	+				-0.3
1,057,610	+				-0.7
1,057,610	+				+0.2
1,057,610	+				-1.7
1,057,610	+				+0.9
1,057,610	+				-1.3
1,057,610	+				-1.8
1,057,610	+				-2.0
1,057,610	+				-0.2
1,057,610	+				-1.4
1,057,610	+				-0.2
1,057,611	-				-0.1
1,057,611	-				-1.7
1,057,611	-				-0.7
1,057,611	-				+1.1
1,057,611	-				-1.1
1,057,653	+				+1.1
1,057,653	+				+2.1
1,057,653	+				-0.7
1,057,653	+				+2.0
1,057,653	+				+2.6
1,057,653	+				+0.1
1,057,653	+				-0.1
1,057,654	-				+1.3
1,057,654	-				-2.9
1,057,654	-				-2.2
1,057,654	-				+1.0
1,057,654	-				-0.4
1,057,654	-				-0.8
1,057,654	-				-0.3
1,057,656	-				-0.4
1,057,665	+				+0.6
1,057,666	-				-0.7
1,057,666	-				+0.7
1,057,723	+				-0.4
1,057,723	+				-2.2
1,057,723	+				-1.0
1,057,723	+				-1.1
1,057,723	+				-1.2
1,057,723	+				+1.7
1,057,723	+				+2.5
1,057,724	-				+0.1
1,057,724	-				+2.7
1,057,724	-				+2.7
1,057,724	-				-1.7
1,057,780	+				-0.8
1,057,780	+				-0.0
1,057,780	+				-1.8
1,057,780	+				-1.7
1,057,780	+				+0.6
1,057,781	-				+0.6
1,057,781	-				-0.7
1,057,781	-				+0.2
1,057,781	-				-0.9
1,057,781	-				-1.5
1,057,781	-				-2.3
1,057,781	-				-1.8
1,057,898	-				+0.6
1,057,898	-				+0.1
1,057,980	-				-1.7
1,057,980	-				+2.1
1,057,980	-				-0.1
1,058,004	+				-1.1
1,058,004	+				-0.7
1,058,005	-				+0.6
1,058,005	-				-0.2
1,058,133	+		ABIE53_004841	0.14	-1.1
1,058,134	-		ABIE53_004841	0.14	+0.8
1,058,134	-		ABIE53_004841	0.14	-1.0
1,058,278	+		ABIE53_004841	0.26	+0.4
1,058,279	-		ABIE53_004841	0.26	-2.0
1,058,279	-		ABIE53_004841	0.26	-0.2
1,058,279	-		ABIE53_004841	0.26	-2.7
1,058,287	+		ABIE53_004841	0.27	+0.1
1,058,287	+		ABIE53_004841	0.27	+0.1
1,058,287	+		ABIE53_004841	0.27	-0.5
1,058,287	+		ABIE53_004841	0.27	+0.7
1,058,287	+		ABIE53_004841	0.27	-0.0
1,058,287	+		ABIE53_004841	0.27	+0.1
1,058,287	+		ABIE53_004841	0.27	-0.7
1,058,287	+		ABIE53_004841	0.27	+0.9
1,058,287	+		ABIE53_004841	0.27	-0.2
1,058,287	+		ABIE53_004841	0.27	-1.1
1,058,287	+		ABIE53_004841	0.27	-1.4
1,058,287	+		ABIE53_004841	0.27	-1.0
1,058,287	+		ABIE53_004841	0.27	-1.7
1,058,287	+		ABIE53_004841	0.27	+1.2
1,058,287	+		ABIE53_004841	0.27	+0.2
1,058,287	+		ABIE53_004841	0.27	+2.7
1,058,287	+		ABIE53_004841	0.27	+0.4
1,058,287	+		ABIE53_004841	0.27	-1.0
1,058,287	+		ABIE53_004841	0.27	+1.3
1,058,287	+		ABIE53_004841	0.27	-1.1
1,058,287	+		ABIE53_004841	0.27	+0.1
1,058,287	+		ABIE53_004841	0.27	-0.2
1,058,287	+		ABIE53_004841	0.27	-2.2
1,058,287	+		ABIE53_004841	0.27	-0.1
1,058,288	-		ABIE53_004841	0.27	-0.7
1,058,288	-		ABIE53_004841	0.27	+3.1
1,058,288	-		ABIE53_004841	0.27	-1.9
1,058,288	-		ABIE53_004841	0.27	-1.3
1,058,288	-		ABIE53_004841	0.27	+0.5
1,058,288	-		ABIE53_004841	0.27	-0.2
1,058,288	-		ABIE53_004841	0.27	-0.7
1,058,288	-		ABIE53_004841	0.27	+0.6
1,058,288	-		ABIE53_004841	0.27	-0.4
1,058,288	-		ABIE53_004841	0.27	-0.7
1,058,288	-		ABIE53_004841	0.27	+1.1
1,058,288	-		ABIE53_004841	0.27	+0.2
1,058,288	-		ABIE53_004841	0.27	+0.2
1,058,288	-		ABIE53_004841	0.27	-2.9
1,058,288	-		ABIE53_004841	0.27	+1.5
1,058,288	-		ABIE53_004841	0.27	-0.9
1,058,288	-		ABIE53_004841	0.27	-1.8
1,058,288	-		ABIE53_004841	0.27	+1.3
1,058,288	-		ABIE53_004841	0.27	+0.4
1,058,288	-		ABIE53_004841	0.27	+0.2
1,058,288	-		ABIE53_004841	0.27	-0.4
1,058,470	+		ABIE53_004841	0.42	+0.3
1,058,471	-		ABIE53_004841	0.42	-1.5
1,058,569	+		ABIE53_004841	0.51	-2.6
1,058,569	+		ABIE53_004841	0.51	+1.1
1,058,569	+		ABIE53_004841	0.51	+0.1
1,058,569	+		ABIE53_004841	0.51	+1.7
1,058,569	+		ABIE53_004841	0.51	+0.9
1,058,569	+		ABIE53_004841	0.51	-0.6
1,058,569	+		ABIE53_004841	0.51	+1.8
1,058,569	+		ABIE53_004841	0.51	+0.8
1,058,569	+		ABIE53_004841	0.51	+0.0
1,058,570	-		ABIE53_004841	0.51	+0.1
1,058,570	-		ABIE53_004841	0.51	+0.0
1,058,570	-		ABIE53_004841	0.51	+2.8