Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004280 and ABIE53_004281 are separated by 130 nucleotides ABIE53_004281 and ABIE53_004282 are separated by 12 nucleotides ABIE53_004282 and ABIE53_004283 are separated by 241 nucleotides
ABIE53_004280: ABIE53_004280 - DNA-binding transcriptional LysR family regulator, at 454,472 to 454,885
_004280
ABIE53_004281: ABIE53_004281 - GTP cyclohydrolase I, at 455,016 to 455,666
_004281
ABIE53_004282: ABIE53_004282 - drug/metabolite transporter (DMT)-like permease, at 455,679 to 456,584
_004282
ABIE53_004283: ABIE53_004283 - membrane protein DedA with SNARE-associated domain/rhodanese-related sulfurtransferase, at 456,826 to 457,902
_004283
Position (kb) 455
456
457 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 454.715 kb on + strand, within ABIE53_004280 at 454.715 kb on + strand, within ABIE53_004280 at 454.716 kb on - strand, within ABIE53_004280 at 454.716 kb on - strand, within ABIE53_004280 at 454.807 kb on + strand, within ABIE53_004280 at 454.926 kb on + strand at 454.926 kb on + strand at 454.927 kb on - strand at 454.927 kb on - strand at 454.953 kb on + strand at 454.953 kb on + strand at 454.953 kb on + strand at 454.954 kb on - strand at 454.954 kb on - strand at 455.187 kb on + strand, within ABIE53_004281 at 455.187 kb on + strand, within ABIE53_004281 at 455.188 kb on - strand, within ABIE53_004281 at 455.188 kb on - strand, within ABIE53_004281 at 455.188 kb on - strand, within ABIE53_004281 at 455.188 kb on - strand, within ABIE53_004281 at 455.199 kb on + strand, within ABIE53_004281 at 455.262 kb on + strand, within ABIE53_004281 at 455.304 kb on + strand, within ABIE53_004281 at 455.304 kb on + strand, within ABIE53_004281 at 455.305 kb on - strand, within ABIE53_004281 at 455.305 kb on - strand, within ABIE53_004281 at 455.305 kb on - strand, within ABIE53_004281 at 455.352 kb on + strand, within ABIE53_004281 at 455.352 kb on + strand, within ABIE53_004281 at 455.352 kb on + strand, within ABIE53_004281 at 455.352 kb on + strand, within ABIE53_004281 at 455.353 kb on - strand, within ABIE53_004281 at 455.460 kb on - strand, within ABIE53_004281 at 455.543 kb on + strand, within ABIE53_004281 at 455.544 kb on - strand, within ABIE53_004281 at 455.657 kb on + strand at 455.657 kb on + strand at 455.657 kb on + strand at 455.658 kb on - strand at 455.658 kb on - strand at 455.664 kb on + strand at 455.664 kb on + strand at 455.664 kb on + strand at 455.664 kb on + strand at 455.665 kb on - strand at 455.665 kb on - strand at 455.665 kb on - strand at 455.875 kb on + strand, within ABIE53_004282 at 455.876 kb on - strand, within ABIE53_004282 at 455.876 kb on - strand, within ABIE53_004282 at 455.876 kb on - strand, within ABIE53_004282 at 455.915 kb on - strand, within ABIE53_004282 at 455.915 kb on - strand, within ABIE53_004282 at 455.917 kb on + strand, within ABIE53_004282 at 455.918 kb on - strand, within ABIE53_004282 at 455.918 kb on - strand, within ABIE53_004282 at 455.918 kb on - strand, within ABIE53_004282 at 455.918 kb on - strand, within ABIE53_004282 at 455.918 kb on - strand, within ABIE53_004282 at 455.918 kb on - strand, within ABIE53_004282 at 455.919 kb on - strand, within ABIE53_004282 at 456.122 kb on + strand, within ABIE53_004282 at 456.122 kb on + strand, within ABIE53_004282 at 456.122 kb on + strand, within ABIE53_004282 at 456.123 kb on - strand, within ABIE53_004282 at 456.123 kb on - strand, within ABIE53_004282 at 456.123 kb on - strand, within ABIE53_004282 at 456.123 kb on - strand, within ABIE53_004282 at 456.123 kb on - strand, within ABIE53_004282 at 456.160 kb on + strand, within ABIE53_004282 at 456.160 kb on + strand, within ABIE53_004282 at 456.161 kb on - strand, within ABIE53_004282 at 456.338 kb on + strand, within ABIE53_004282 at 456.338 kb on + strand, within ABIE53_004282 at 456.339 kb on - strand, within ABIE53_004282 at 456.339 kb on - strand, within ABIE53_004282 at 456.339 kb on - strand, within ABIE53_004282 at 456.341 kb on - strand, within ABIE53_004282 at 456.562 kb on + strand at 456.571 kb on + strand at 456.571 kb on + strand at 456.571 kb on + strand at 456.572 kb on - strand at 456.572 kb on - strand at 456.572 kb on - strand at 456.620 kb on + strand at 456.620 kb on + strand at 456.620 kb on + strand at 456.620 kb on + strand at 456.620 kb on + strand at 456.620 kb on + strand at 456.621 kb on - strand at 456.695 kb on + strand at 456.695 kb on + strand at 456.757 kb on - strand at 456.782 kb on + strand at 456.823 kb on + strand at 456.823 kb on + strand at 456.824 kb on - strand at 456.824 kb on - strand at 456.824 kb on - strand at 456.824 kb on - strand at 456.824 kb on - strand at 457.048 kb on + strand, within ABIE53_004283 at 457.049 kb on - strand, within ABIE53_004283 at 457.231 kb on + strand, within ABIE53_004283 at 457.231 kb on + strand, within ABIE53_004283 at 457.231 kb on + strand, within ABIE53_004283 at 457.231 kb on + strand, within ABIE53_004283 at 457.231 kb on + strand, within ABIE53_004283 at 457.231 kb on + strand, within ABIE53_004283 at 457.231 kb on + strand, within ABIE53_004283 at 457.232 kb on - strand, within ABIE53_004283 at 457.232 kb on - strand, within ABIE53_004283 at 457.232 kb on - strand, within ABIE53_004283 at 457.232 kb on - strand, within ABIE53_004283 at 457.232 kb on - strand, within ABIE53_004283 at 457.232 kb on - strand, within ABIE53_004283 at 457.232 kb on - strand, within ABIE53_004283 at 457.232 kb on - strand, within ABIE53_004283 at 457.367 kb on + strand, within ABIE53_004283 at 457.382 kb on + strand, within ABIE53_004283 at 457.382 kb on + strand, within ABIE53_004283 at 457.382 kb on + strand, within ABIE53_004283 at 457.382 kb on + strand, within ABIE53_004283 at 457.382 kb on + strand, within ABIE53_004283 at 457.383 kb on - strand, within ABIE53_004283 at 457.383 kb on - strand, within ABIE53_004283 at 457.383 kb on - strand, within ABIE53_004283 at 457.383 kb on - strand, within ABIE53_004283 at 457.383 kb on - strand, within ABIE53_004283 at 457.383 kb on - strand, within ABIE53_004283 at 457.383 kb on - strand, within ABIE53_004283 at 457.383 kb on - strand, within ABIE53_004283 at 457.383 kb on - strand, within ABIE53_004283 at 457.383 kb on - strand, within ABIE53_004283 at 457.384 kb on + strand, within ABIE53_004283 at 457.384 kb on + strand, within ABIE53_004283 at 457.384 kb on + strand, within ABIE53_004283 at 457.384 kb on + strand, within ABIE53_004283 at 457.384 kb on + strand, within ABIE53_004283 at 457.385 kb on - strand, within ABIE53_004283 at 457.385 kb on - strand, within ABIE53_004283 at 457.385 kb on - strand, within ABIE53_004283 at 457.385 kb on - strand, within ABIE53_004283
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 454,715 + ABIE53_004280 0.59 -1.6 454,715 + ABIE53_004280 0.59 +0.8 454,716 - ABIE53_004280 0.59 +0.7 454,716 - ABIE53_004280 0.59 -1.2 454,807 + ABIE53_004280 0.81 -2.7 454,926 + -0.2 454,926 + -1.4 454,927 - +1.2 454,927 - -0.0 454,953 + -0.5 454,953 + +1.9 454,953 + -0.2 454,954 - +0.5 454,954 - -1.1 455,187 + ABIE53_004281 0.26 +0.5 455,187 + ABIE53_004281 0.26 +0.5 455,188 - ABIE53_004281 0.26 +1.8 455,188 - ABIE53_004281 0.26 +0.9 455,188 - ABIE53_004281 0.26 -1.0 455,188 - ABIE53_004281 0.26 +1.1 455,199 + ABIE53_004281 0.28 -2.2 455,262 + ABIE53_004281 0.38 +1.1 455,304 + ABIE53_004281 0.44 -3.1 455,304 + ABIE53_004281 0.44 +1.8 455,305 - ABIE53_004281 0.44 -1.3 455,305 - ABIE53_004281 0.44 -0.7 455,305 - ABIE53_004281 0.44 -0.7 455,352 + ABIE53_004281 0.52 +0.5 455,352 + ABIE53_004281 0.52 -0.6 455,352 + ABIE53_004281 0.52 -0.9 455,352 + ABIE53_004281 0.52 -0.1 455,353 - ABIE53_004281 0.52 -2.1 455,460 - ABIE53_004281 0.68 -1.4 455,543 + ABIE53_004281 0.81 +0.1 455,544 - ABIE53_004281 0.81 -0.7 455,657 + +0.5 455,657 + +1.1 455,657 + -0.4 455,658 - +0.4 455,658 - +0.6 455,664 + +2.1 455,664 + -1.3 455,664 + +0.1 455,664 + +0.1 455,665 - -0.0 455,665 - -1.5 455,665 - +0.2 455,875 + ABIE53_004282 0.22 -1.5 455,876 - ABIE53_004282 0.22 -0.2 455,876 - ABIE53_004282 0.22 -0.7 455,876 - ABIE53_004282 0.22 -0.4 455,915 - ABIE53_004282 0.26 -0.5 455,915 - ABIE53_004282 0.26 +0.3 455,917 + ABIE53_004282 0.26 +0.1 455,918 - ABIE53_004282 0.26 -0.2 455,918 - ABIE53_004282 0.26 -2.3 455,918 - ABIE53_004282 0.26 +1.1 455,918 - ABIE53_004282 0.26 -1.7 455,918 - ABIE53_004282 0.26 +0.1 455,918 - ABIE53_004282 0.26 -3.5 455,919 - ABIE53_004282 0.26 +0.2 456,122 + ABIE53_004282 0.49 -0.9 456,122 + ABIE53_004282 0.49 -1.5 456,122 + ABIE53_004282 0.49 +0.5 456,123 - ABIE53_004282 0.49 -1.6 456,123 - ABIE53_004282 0.49 +1.0 456,123 - ABIE53_004282 0.49 -1.8 456,123 - ABIE53_004282 0.49 -1.9 456,123 - ABIE53_004282 0.49 +0.5 456,160 + ABIE53_004282 0.53 -0.2 456,160 + ABIE53_004282 0.53 -1.1 456,161 - ABIE53_004282 0.53 -0.4 456,338 + ABIE53_004282 0.73 +0.5 456,338 + ABIE53_004282 0.73 +1.1 456,339 - ABIE53_004282 0.73 -2.3 456,339 - ABIE53_004282 0.73 -0.9 456,339 - ABIE53_004282 0.73 -3.0 456,341 - ABIE53_004282 0.73 -2.0 456,562 + +3.8 456,571 + -2.0 456,571 + +0.2 456,571 + -0.2 456,572 - +1.7 456,572 - +0.8 456,572 - -2.1 456,620 + -1.9 456,620 + +0.5 456,620 + +0.9 456,620 + -2.0 456,620 + +0.1 456,620 + +0.1 456,621 - +0.5 456,695 + +1.3 456,695 + -0.3 456,757 - +0.1 456,782 + +1.1 456,823 + -2.8 456,823 + -0.2 456,824 - -0.7 456,824 - -0.5 456,824 - +0.8 456,824 - -0.5 456,824 - +0.2 457,048 + ABIE53_004283 0.21 +2.4 457,049 - ABIE53_004283 0.21 -2.3 457,231 + ABIE53_004283 0.38 +1.1 457,231 + ABIE53_004283 0.38 -2.0 457,231 + ABIE53_004283 0.38 -1.1 457,231 + ABIE53_004283 0.38 -0.6 457,231 + ABIE53_004283 0.38 -0.5 457,231 + ABIE53_004283 0.38 +2.1 457,231 + ABIE53_004283 0.38 +0.5 457,232 - ABIE53_004283 0.38 -0.4 457,232 - ABIE53_004283 0.38 -0.4 457,232 - ABIE53_004283 0.38 -2.2 457,232 - ABIE53_004283 0.38 -0.4 457,232 - ABIE53_004283 0.38 -0.5 457,232 - ABIE53_004283 0.38 -0.2 457,232 - ABIE53_004283 0.38 -0.3 457,232 - ABIE53_004283 0.38 +0.3 457,367 + ABIE53_004283 0.50 +0.6 457,382 + ABIE53_004283 0.52 +0.1 457,382 + ABIE53_004283 0.52 -0.5 457,382 + ABIE53_004283 0.52 +0.3 457,382 + ABIE53_004283 0.52 +0.5 457,382 + ABIE53_004283 0.52 -0.6 457,383 - ABIE53_004283 0.52 -2.0 457,383 - ABIE53_004283 0.52 -1.9 457,383 - ABIE53_004283 0.52 -0.7 457,383 - ABIE53_004283 0.52 -1.1 457,383 - ABIE53_004283 0.52 +1.7 457,383 - ABIE53_004283 0.52 -1.6 457,383 - ABIE53_004283 0.52 +1.8 457,383 - ABIE53_004283 0.52 +2.1 457,383 - ABIE53_004283 0.52 +0.5 457,383 - ABIE53_004283 0.52 -0.3 457,384 + ABIE53_004283 0.52 +0.6 457,384 + ABIE53_004283 0.52 +0.2 457,384 + ABIE53_004283 0.52 -1.1 457,384 + ABIE53_004283 0.52 -0.2 457,384 + ABIE53_004283 0.52 +0.1 457,385 - ABIE53_004283 0.52 -2.9 457,385 - ABIE53_004283 0.52 +0.3 457,385 - ABIE53_004283 0.52 +1.3 457,385 - ABIE53_004283 0.52 -1.0
Or see this region's nucleotide sequence