Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004212

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_004211 and ABIE53_004212 overlap by 4 nucleotidesABIE53_004212 and ABIE53_004213 are separated by 13 nucleotides ABIE53_004211: ABIE53_004211 - phosphoenolpyruvate-protein phosphotransferase, at 383,461 to 385,968 _004211 ABIE53_004212: ABIE53_004212 - 1-phosphofructokinase, at 385,965 to 387,020 _004212 ABIE53_004213: ABIE53_004213 - PTS system fructose-specific IIC component, at 387,034 to 388,869 _004213 Position (kb) 385 386 387 388Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 385.204 kb on + strand, within ABIE53_004211at 385.205 kb on - strand, within ABIE53_004211at 385.205 kb on - strand, within ABIE53_004211at 385.205 kb on - strand, within ABIE53_004211at 385.207 kb on - strand, within ABIE53_004211at 385.294 kb on + strand, within ABIE53_004211at 385.295 kb on - strand, within ABIE53_004211at 385.295 kb on - strand, within ABIE53_004211at 385.396 kb on + strand, within ABIE53_004211at 385.397 kb on - strand, within ABIE53_004211at 385.621 kb on + strand, within ABIE53_004211at 385.621 kb on + strand, within ABIE53_004211at 385.621 kb on + strand, within ABIE53_004211at 385.621 kb on + strand, within ABIE53_004211at 385.621 kb on + strand, within ABIE53_004211at 385.621 kb on + strand, within ABIE53_004211at 385.622 kb on - strand, within ABIE53_004211at 385.622 kb on - strand, within ABIE53_004211at 385.622 kb on - strand, within ABIE53_004211at 385.622 kb on - strand, within ABIE53_004211at 385.622 kb on - strand, within ABIE53_004211at 385.622 kb on - strand, within ABIE53_004211at 385.748 kb on + strandat 385.749 kb on - strandat 386.116 kb on - strand, within ABIE53_004212at 386.116 kb on - strand, within ABIE53_004212at 386.412 kb on + strand, within ABIE53_004212at 386.412 kb on + strand, within ABIE53_004212at 386.412 kb on + strand, within ABIE53_004212at 386.634 kb on + strand, within ABIE53_004212at 386.635 kb on - strand, within ABIE53_004212at 386.635 kb on - strand, within ABIE53_004212at 386.635 kb on - strand, within ABIE53_004212at 386.635 kb on - strand, within ABIE53_004212at 386.635 kb on - strand, within ABIE53_004212at 386.635 kb on - strand, within ABIE53_004212at 386.635 kb on - strand, within ABIE53_004212at 386.635 kb on - strand, within ABIE53_004212at 386.743 kb on - strand, within ABIE53_004212at 386.743 kb on - strand, within ABIE53_004212at 386.743 kb on - strand, within ABIE53_004212at 386.743 kb on - strand, within ABIE53_004212at 387.018 kb on + strandat 387.018 kb on + strandat 387.018 kb on + strandat 387.018 kb on + strandat 387.019 kb on - strandat 387.057 kb on - strandat 387.057 kb on - strandat 387.213 kb on - strandat 387.213 kb on - strandat 387.364 kb on - strand, within ABIE53_004213at 387.615 kb on + strand, within ABIE53_004213at 387.655 kb on + strand, within ABIE53_004213at 387.655 kb on + strand, within ABIE53_004213at 387.655 kb on + strand, within ABIE53_004213at 387.655 kb on + strand, within ABIE53_004213at 387.656 kb on - strand, within ABIE53_004213at 387.656 kb on - strand, within ABIE53_004213at 387.656 kb on - strand, within ABIE53_004213at 387.952 kb on + strand, within ABIE53_004213at 387.952 kb on + strand, within ABIE53_004213at 387.952 kb on + strand, within ABIE53_004213at 387.952 kb on + strand, within ABIE53_004213at 387.952 kb on + strand, within ABIE53_004213at 387.953 kb on - strand, within ABIE53_004213at 387.953 kb on - strand, within ABIE53_004213at 387.953 kb on - strand, within ABIE53_004213at 387.953 kb on - strand, within ABIE53_004213at 387.953 kb on - strand, within ABIE53_004213at 387.953 kb on - strand, within ABIE53_004213at 387.953 kb on - strand, within ABIE53_004213at 387.954 kb on - strand, within ABIE53_004213

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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385,204 + ABIE53_004211 0.69 -2.1
385,205 - ABIE53_004211 0.70 +2.0
385,205 - ABIE53_004211 0.70 -0.3
385,205 - ABIE53_004211 0.70 -0.5
385,207 - ABIE53_004211 0.70 +2.4
385,294 + ABIE53_004211 0.73 -0.5
385,295 - ABIE53_004211 0.73 -0.3
385,295 - ABIE53_004211 0.73 +1.2
385,396 + ABIE53_004211 0.77 -0.8
385,397 - ABIE53_004211 0.77 -0.3
385,621 + ABIE53_004211 0.86 -1.0
385,621 + ABIE53_004211 0.86 -1.0
385,621 + ABIE53_004211 0.86 +0.3
385,621 + ABIE53_004211 0.86 -0.2
385,621 + ABIE53_004211 0.86 +1.0
385,621 + ABIE53_004211 0.86 -0.7
385,622 - ABIE53_004211 0.86 -0.1
385,622 - ABIE53_004211 0.86 -0.7
385,622 - ABIE53_004211 0.86 -1.1
385,622 - ABIE53_004211 0.86 +2.0
385,622 - ABIE53_004211 0.86 -0.3
385,622 - ABIE53_004211 0.86 +0.2
385,748 + +2.0
385,749 - -0.3
386,116 - ABIE53_004212 0.14 +0.5
386,116 - ABIE53_004212 0.14 +1.3
386,412 + ABIE53_004212 0.42 +0.0
386,412 + ABIE53_004212 0.42 -0.4
386,412 + ABIE53_004212 0.42 -0.5
386,634 + ABIE53_004212 0.63 +3.6
386,635 - ABIE53_004212 0.63 -0.8
386,635 - ABIE53_004212 0.63 -1.1
386,635 - ABIE53_004212 0.63 +0.5
386,635 - ABIE53_004212 0.63 +0.6
386,635 - ABIE53_004212 0.63 +0.9
386,635 - ABIE53_004212 0.63 +0.3
386,635 - ABIE53_004212 0.63 -0.3
386,635 - ABIE53_004212 0.63 +2.4
386,743 - ABIE53_004212 0.74 +0.0
386,743 - ABIE53_004212 0.74 -2.2
386,743 - ABIE53_004212 0.74 +0.1
386,743 - ABIE53_004212 0.74 -1.5
387,018 + -0.3
387,018 + -1.0
387,018 + -1.5
387,018 + -0.8
387,019 - +1.6
387,057 - -1.0
387,057 - -1.4
387,213 - +4.0
387,213 - +1.5
387,364 - ABIE53_004213 0.18 -1.2
387,615 + ABIE53_004213 0.32 -1.2
387,655 + ABIE53_004213 0.34 -0.5
387,655 + ABIE53_004213 0.34 +0.5
387,655 + ABIE53_004213 0.34 -0.6
387,655 + ABIE53_004213 0.34 +1.2
387,656 - ABIE53_004213 0.34 -1.1
387,656 - ABIE53_004213 0.34 +0.2
387,656 - ABIE53_004213 0.34 +4.6
387,952 + ABIE53_004213 0.50 +2.4
387,952 + ABIE53_004213 0.50 -0.5
387,952 + ABIE53_004213 0.50 -2.0
387,952 + ABIE53_004213 0.50 +0.7
387,952 + ABIE53_004213 0.50 +0.5
387,953 - ABIE53_004213 0.50 -0.3
387,953 - ABIE53_004213 0.50 -1.9
387,953 - ABIE53_004213 0.50 -1.7
387,953 - ABIE53_004213 0.50 +1.5
387,953 - ABIE53_004213 0.50 -0.8
387,953 - ABIE53_004213 0.50 +0.6
387,953 - ABIE53_004213 0.50 -2.0
387,954 - ABIE53_004213 0.50 +0.0

Or see this region's nucleotide sequence